CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
evm.TU.supercontig_146.41
(
Carica papaya
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03859 (CG-1)
IPR005559
evm.TU.supercontig_146.41
T163520_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CMTA2
M01901_2.00
Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN
PBM
Weirauch et al.(2014)
pTH7506
0.733
0.733
EICBP.B
M06828_2.00
Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH
Dap-seq
OMalley et al.(2016)
CAMTA1_col_a
0.707
0.707
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_146.41
CG-1
16
90
DAQSRWLRPAEICEILRNYRRFDLTPDPPVKPSAGSLFLFDRKALRYFRKDGHRWRKKKDGKTVREAHEKLKGLL
Links
Other
CG-1
family TFs
Other
Carica papaya
TFs
80 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g001759m.g
Citrus sinensis
orange1.1g001759m.g
I
0.840
Ciclev10004234m.g
Citrus clementina
Ciclev10004234m.g
I
0.840
Aquca_003_00380
Aquilegia coerulea
Aquca_003_00380
I
0.813
Eucgr.I02632
Eucalyptus grandis
Eucgr.I02632
I
0.787
Aquca_008_00132
Aquilegia coerulea
Aquca_008_00132
I
0.787
Ca_05255
Cicer arietinum
Ca_05255
I
0.773
Cla013051
Citrullus lanatus
Cla013051
I
0.773
GSMUA_Achr3G21310_001
Musa acuminata
GSMUA_Achr3G21310_001
I
0.773
chr4.CM0182.510.nc
Lotus japonicus
chr4.CM0182.510.nc
I
0.773
Aquca_010_00201
Aquilegia coerulea
Aquca_010_00201
I
0.773
GLYMA08G19101
Glycine max
GLYMA08G19101
I
0.760
29889.m003372
Ricinus communis
29889.m003372
I
0.760
Lus10003405.g
Linum usitatissimum
Lus10003405.g
I
0.760
OGLUM03G20490
Oryza glumaepatula
OGLUM03G20490
I
0.747
OB10G16130
Oryza brachyantha
OB10G16130
I
0.747
OBART03G19880
Oryza barthii
OBART03G19880
I
0.747
OMERI03G17850
Oryza meridionalis
OMERI03G17850
I
0.747
AMTR_s00038p00173360
Amborella trichopoda
AMTR_s00038p00173360
I
0.747
Bo9g018010
Brassica oleracea
Bo9g018010
I
0.747
BGIOSGA012779
Oryza indica
BGIOSGA012779
I
0.747
ORUFI03G20520
Oryza rufipogon
ORUFI03G20520
I
0.747
ONIVA03G21570
Oryza nivara
ONIVA03G21570
I
0.747
Gorai.013G061100
Gossypium raimondii
Gorai.013G061100
I
0.747
Gorai.005G220600
Gossypium raimondii
Gorai.005G220600
I
0.747
OS10G0375600
Oryza sativa
OS10G0375600
I
0.733
ORUFI10G08490
Oryza rufipogon
ORUFI10G08490
I
0.733
SELMODRAFT_441667
Selaginella moellendorffii
SELMODRAFT_441667
I
0.733
mgf015897m
Mimulus guttatus
mgf015897m
I
0.733
mgf010601m
Mimulus guttatus
mgf010601m
I
0.733
TCM_021468
Theobroma cacao
TCM_021468
I
0.733
mgf024932m
Mimulus guttatus
mgf024932m
I
0.733
Bostr.0568s0382
Boechera stricta
Bostr.0568s0382
I
0.733
scaffold_803130.1
Arabidopsis lyrata
scaffold_803130.1
I
0.733
SELMODRAFT_413101
Selaginella moellendorffii
SELMODRAFT_413101
I
0.733
Sb01g044480
Sorghum bicolor
Sb01g044480
I
0.733
OGLUM10G07770
Oryza glumaepatula
OGLUM10G07770
I
0.733
MLOC_63299
Hordeum vulgare
MLOC_63299
I
0.733
ORGLA10G0066800
Oryza glaberrima
ORGLA10G0066800
I
0.733
LPERR10G05550
Leersia perrieri
LPERR10G05550
I
0.733
GSMUA_AchrUn_randomG02100_001
Musa acuminata
GSMUA_AchrUn_randomG02100_001
I
0.733
GSMUA_Achr1G21540_001
Musa acuminata
GSMUA_Achr1G21540_001
I
0.733
CMTA2
Arabidopsis thaliana
AT5G64220
D
0.733
OBART10G08060
Oryza barthii
OBART10G08060
I
0.733
Cagra.0248s0103
Capsella grandiflora
Cagra.0248s0103
I
0.733
ONIVA10G07730
Oryza nivara
ONIVA10G07730
I
0.733
Carubv10025787m.g
Capsella rubella
Carubv10025787m.g
I
0.733
OLONG_003971
Oryza longistaminata
OLONG_003971
I
0.733
Pavir.J35200
Panicum virgatum
Pavir.J35200
I
0.720
chr4.LjT13D08.100.nd
Lotus japonicus
chr4.LjT13D08.100.nd
I
0.720
Pavir.Ib02991
Panicum virgatum
Pavir.Ib02991
I
0.720
evm.TU.supercontig_213.9
Carica papaya
evm.TU.supercontig_213.9
I
0.720
Eucgr.H04783
Eucalyptus grandis
Eucgr.H04783
I
0.720
Eucgr.I02662
Eucalyptus grandis
Eucgr.I02662
I
0.720
Pavir.Ia02749
Panicum virgatum
Pavir.Ia02749
I
0.720
OS03G0191000
Oryza sativa
OS03G0191000
I
0.720
GSMUA_AchrUn_randomG08930_001
Musa acuminata
GSMUA_AchrUn_randomG08930_001
I
0.720
LPERR03G05920
Leersia perrieri
LPERR03G05920
I
0.720
OB03G16740
Oryza brachyantha
OB03G16740
I
0.720
OGLUM03G06680
Oryza glumaepatula
OGLUM03G06680
I
0.720
GRMZM2G341747
Zea mays
GRMZM2G341747
I
0.720
GRMZM2G153594
Zea mays
GRMZM2G153594
I
0.720
BGIOSGA011302
Oryza indica
BGIOSGA011302
I
0.720
Bo9g174050
Brassica oleracea
Bo9g174050
I
0.720
Bra009382
Brassica rapa
Bra009382
I
0.720
OLONG_001033
Oryza longistaminata
OLONG_001033
I
0.720
OBART03G06570
Oryza barthii
OBART03G06570
I
0.720
OMERI03G06500
Oryza meridionalis
OMERI03G06500
I
0.720
Sb02g039710
Sorghum bicolor
Sb02g039710
I
0.720
Solyc04g056270.2
Solanum lycopersicum
Solyc04g056270.2
I
0.720
Si028797m.g
Setaria italica
Si028797m.g
I
0.720
Sb0012s010230
Sorghum bicolor
Sb0012s010230
I
0.720
ORUFI03G06510
Oryza rufipogon
ORUFI03G06510
I
0.720
ONIVA02G06230
Oryza nivara
ONIVA02G06230
I
0.720
ORGLA03G0064000
Oryza glaberrima
ORGLA03G0064000
I
0.720
EICBP.B
Arabidopsis thaliana
AT5G09410
D
0.707
Thhalv10012552m.g
Eutrema salsugineum
Thhalv10012552m.g
I
0.707
MDP0000139862
Malus domestica
MDP0000139862
I
0.707
TCM_001108
Theobroma cacao
TCM_001108
I
0.707
GLYMA08G14370
Glycine max
GLYMA08G14370
I
0.707
Si034054m.g
Setaria italica
Si034054m.g
I
0.707