orange1.1g001365m.g (Citrus sinensis)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 orange1.1g001365m.g T163568_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CMTA2
M01901_2.00
Arabidopsis thaliana
NNDVCGYGT

ACRCGBHNN
PBM
Weirauch et al.(2014)
pTH7506
0.851 0.851
CMTA3
M01900_2.00
Arabidopsis thaliana
VCGYGTNNN

NNNACRCGB
PBM
Weirauch et al.(2014)
pTH8209
0.833 0.833
EICBP.B
M06828_2.00
Arabidopsis thaliana
DARVCGCGTKDD

HHMACGCGBYTH
Dap-seq
OMalley et al.(2016)
CAMTA1_col_a
0.825 0.825
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g001365m CG-1 21 135
orange1.1g001474m CG-1 21 135
orange1.1g002539m CG-1 21 135
orange1.1g004027m CG-1 21 135
orange1.1g004380m CG-1 21 135

Links

Other CG-1 family TFs
Other Citrus sinensis TFs

Invalid Input OrderBy

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action