orange1.1g002476m.g (Citrus sinensis)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 orange1.1g002476m.g T163571_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CAMTA5
M06827_2.00
Arabidopsis thaliana
NVGYGTNNDHNVCGYGTN

NACRCGBNDHNNACRCBN
Dap-seq
OMalley et al.(2016)
CAMTA5_col_a
0.895 0.895
Q2WEL1_ORYSA
M10406_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$CBT_01
0.737 0.737
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g002476m CG-1 27 141
orange1.1g002479m CG-1 27 141
orange1.1g003097m CG-1 1 72
orange1.1g003098m CG-1 1 72
orange1.1g003650m CG-1 27 141
orange1.1g003660m CG-1 27 141
orange1.1g006569m CG-1 27 141

Links

Other CG-1 family TFs
Other Citrus sinensis TFs

77 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000009099 Ailuropoda melanoleuca ENSAMEG00000009099 N 0.000
SATB1 Anolis carolinensis ENSACAG00000007941 I 0.000
ENSP00000333367-D2 Bos grunniens ENSP00000333367-D2 N 0.000
Brh_R012783 Buceros rhinoceros Brh_R012783 N 0.000
SATB1 Canis familiaris ENSCAFG00000005839 N 0.000
ENSCSAG00000009921 Chlorocebus sabaeus ENSCSAG00000009921 N 0.000
satb1a Danio rerio ENSDARG00000057649 N 0.000
ENSGMOG00000007176 Gadus morhua ENSGMOG00000007176 N 0.000
ENSGMOG00000011439 Gadus morhua ENSGMOG00000011439 N 0.000
satb1a Gasterosteus aculeatus ENSGACG00000006960 N 0.000
ENSMEUG00000005161 Macropus eugenii ENSMEUG00000005161 N 0.000
ENSONIG00000004539 Oreochromis niloticus ENSONIG00000004539 N 0.000
satb1a Oryzias latipes ENSORLG00000004761 N 0.000
ENSPANG00000004656 Papio anubis ENSPANG00000004656 N 0.000
Satb1 Rattus norvegicus ENSRNOG00000012942 I 0.000
SATB1 Sorex araneus ENSSARG00000006820 N 0.000
ENSSSCG00000030990 Sus scrofa ENSSSCG00000030990 N 0.000
satb1a Takifugu rubripes ENSTRUG00000005121 N 0.000
ENSTRUG00000009881 Takifugu rubripes ENSTRUG00000009881 N 0.000
satb1a Tetraodon nigroviridis ENSTNIG00000017750 N 0.000
Tal_R004830 Tyto alba Tal_R004830 N 0.000
SATB1 Vicugna pacos ENSVPAG00000011890 N 0.000