Pavir.Ib01843 (Panicum virgatum)
CG-1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03859 (CG-1) IPR005559 Pavir.Ib01843 T163582_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CMTA2
M01901_2.00 		Arabidopsis thaliana
NNDVCGYGT
ACRCGBHNN		 PBM
Weirauch et al.(2014)
pTH7506 		0.756 0.756
EICBP.B
M06828_2.00 		Arabidopsis thaliana
DARVCGCGTKDD
HHMACGCGBYTH		 Dap-seq
OMalley et al.(2016)
CAMTA1_col_a 		0.733 0.733
CMTA3
M01900_2.00 		Arabidopsis thaliana
VCGYGTNNN
NNNACRCGB		 PBM
Weirauch et al.(2014)
pTH8209 		0.711 0.711
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib01843.1.p CG-1 34 79

Links

Other CG-1 family TFs
Other Panicum virgatum TFs

97 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OGLUM03G20490 Oryza glumaepatula OGLUM03G20490 I 0.889
ONIVA03G21570 Oryza nivara ONIVA03G21570 I 0.889
OMERI03G17850 Oryza meridionalis OMERI03G17850 I 0.889
OLONG_004418 Oryza longistaminata OLONG_004418 I 0.889
Pavir.Ia03131 Panicum virgatum Pavir.Ia03131 I 0.889
BGIOSGA012779 Oryza indica BGIOSGA012779 I 0.889
Si034054m.g Setaria italica Si034054m.g I 0.889
ORUFI03G20520 Oryza rufipogon ORUFI03G20520 I 0.889
OBART03G19880 Oryza barthii OBART03G19880 I 0.889
OB10G16130 Oryza brachyantha OB10G16130 I 0.844
OGLUM10G07770 Oryza glumaepatula OGLUM10G07770 I 0.844
OLONG_003971 Oryza longistaminata OLONG_003971 I 0.844
ONIVA10G07730 Oryza nivara ONIVA10G07730 I 0.844
Si034076m.g Setaria italica Si034076m.g I 0.844
OS10G0375600 Oryza sativa OS10G0375600 I 0.844
ORUFI10G08490 Oryza rufipogon ORUFI10G08490 I 0.844
ORGLA10G0066800 Oryza glaberrima ORGLA10G0066800 I 0.844
LPERR10G05550 Leersia perrieri LPERR10G05550 I 0.844
OBART10G08060 Oryza barthii OBART10G08060 I 0.844
Pavir.Ib00572 Panicum virgatum Pavir.Ib00572 I 0.844
ORGLA03G0064000 Oryza glaberrima ORGLA03G0064000 I 0.822
Pavir.Ia02749 Panicum virgatum Pavir.Ia02749 I 0.822
OPUNC03G06340 Oryza punctata OPUNC03G06340 I 0.822
Traes_4DL_C2F35966E Triticum aestivum Traes_4DL_C2F35966E I 0.822
MLOC_38704 Hordeum vulgare MLOC_38704 I 0.822
ORUFI03G06510 Oryza rufipogon ORUFI03G06510 I 0.822
BGIOSGA011302 Oryza indica BGIOSGA011302 I 0.822
Traes_4BL_A37F6FD08 Triticum aestivum Traes_4BL_A37F6FD08 I 0.822
Traes_4AL_2F7E6536A Triticum aestivum Traes_4AL_2F7E6536A I 0.822
Pavir.Ib02991 Panicum virgatum Pavir.Ib02991 I 0.822
OS03G0191000 Oryza sativa OS03G0191000 I 0.822
ONIVA02G06230 Oryza nivara ONIVA02G06230 I 0.822
Sb0012s010230 Sorghum bicolor Sb0012s010230 I 0.822
F775_29292 Aegilops tauschii F775_29292 I 0.822
OGLUM03G06680 Oryza glumaepatula OGLUM03G06680 I 0.822
OBART03G06570 Oryza barthii OBART03G06570 I 0.822
LPERR03G05920 Leersia perrieri LPERR03G05920 I 0.822
OLONG_001033 Oryza longistaminata OLONG_001033 I 0.822
GRMZM2G341747 Zea mays GRMZM2G341747 I 0.822
OMERI03G06500 Oryza meridionalis OMERI03G06500 I 0.822
OB03G16740 Oryza brachyantha OB03G16740 I 0.800
Traes_5BL_92902F993 Triticum aestivum Traes_5BL_92902F993 I 0.800
Sb01g044480 Sorghum bicolor Sb01g044480 I 0.800
GRMZM2G447551 Zea mays GRMZM2G447551 I 0.800
Eucgr.H04783 Eucalyptus grandis Eucgr.H04783 I 0.800
Gorai.005G220600 Gossypium raimondii Gorai.005G220600 I 0.800
Pavir.J35200 Panicum virgatum Pavir.J35200 I 0.778
TCM_001108 Theobroma cacao TCM_001108 I 0.778
Solyc04g056270.2 Solanum lycopersicum Solyc04g056270.2 I 0.778
Gorai.008G089900 Gossypium raimondii Gorai.008G089900 I 0.778
Cla013051 Citrullus lanatus Cla013051 I 0.778
evm.TU.supercontig_213.9 Carica papaya evm.TU.supercontig_213.9 I 0.778
Pm002007 Prunus mume Pm002007 I 0.778
TRIUR3_23040 Triticum urartu TRIUR3_23040 I 0.778
PRUPE_ppa000612mg Prunus persica PRUPE_ppa000612mg I 0.778
MTR_2g008840 Medicago truncatula MTR_2g008840 I 0.778
GLYMA08G14370 Glycine max GLYMA08G14370 I 0.778
POPTR_0007s05410 Populus trichocarpa POPTR_0007s05410 I 0.778
MLOC_63299 Hordeum vulgare MLOC_63299 I 0.778
AMTR_s00038p00173360 Amborella trichopoda AMTR_s00038p00173360 I 0.778
Sb02g039710 Sorghum bicolor Sb02g039710 I 0.778
Aquca_010_00201 Aquilegia coerulea Aquca_010_00201 I 0.756
Si028797m.g Setaria italica Si028797m.g I 0.756
Bostr.0568s0382 Boechera stricta Bostr.0568s0382 I 0.756
Carubv10025787m.g Capsella rubella Carubv10025787m.g I 0.756
Eucgr.I02662 Eucalyptus grandis Eucgr.I02662 I 0.756
CMTA2 Arabidopsis thaliana AT5G64220 D 0.756
Aquca_008_00132 Aquilegia coerulea Aquca_008_00132 I 0.756
GLYMA05G31190 Glycine max GLYMA05G31190 I 0.756
chr6.CM0314.100.nd Lotus japonicus chr6.CM0314.100.nd I 0.756
Cagra.0248s0103 Capsella grandiflora Cagra.0248s0103 I 0.756
GLYMA15G05900 Glycine max GLYMA15G05900 I 0.756
GLYMA08G19101 Glycine max GLYMA08G19101 I 0.756
ONIVA10G07200 Oryza nivara ONIVA10G07200 I 0.756
scaffold_803130.1 Arabidopsis lyrata scaffold_803130.1 I 0.756
orange1.1g001406m.g Citrus sinensis orange1.1g001406m.g I 0.733
Gorai.013G061100 Gossypium raimondii Gorai.013G061100 I 0.733
Bra009382 Brassica rapa Bra009382 I 0.733
Bo9g174050 Brassica oleracea Bo9g174050 I 0.733
EICBP.B Arabidopsis thaliana AT5G09410 D 0.733
mgf015897m Mimulus guttatus mgf015897m I 0.733
Bo9g018010 Brassica oleracea Bo9g018010 I 0.733
Thhalv10012552m.g Eutrema salsugineum Thhalv10012552m.g I 0.733
Ca_05255 Cicer arietinum Ca_05255 I 0.733
mgf010601m Mimulus guttatus mgf010601m I 0.733
Cla004910 Citrullus lanatus Cla004910 N 0.733
Ca_09562 Cicer arietinum Ca_09562 I 0.733
CMTA3 Arabidopsis thaliana AT2G22300 D 0.711
cassava1518.valid.m1 Manihot esculenta cassava1518.valid.m1 I 0.711
PK04004.1 Cannabis sativa PK04004.1 I 0.711
Bostr.5022s0003 Boechera stricta Bostr.5022s0003 I 0.711
Carubv10024738m.g Capsella rubella Carubv10024738m.g I 0.711
Eucgr.I02632 Eucalyptus grandis Eucgr.I02632 I 0.711
orange1.1g001759m.g Citrus sinensis orange1.1g001759m.g I 0.711
Ciclev10004234m.g Citrus clementina Ciclev10004234m.g I 0.711
CAMTA3 Arabidopsis lyrata fgenesh2_kg.4__153__AT2G22300.2 I 0.711
Cagra.2300s0004 Capsella grandiflora Cagra.2300s0004 I 0.711