CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.J03014
(
Panicum virgatum
)
CG-1
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03859 (CG-1)
IPR005559
Pavir.J03014
T163584_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J03014.1.p
CG-1
14
128
VVKTRWLKPQEVLQILRNHELFTVSHNPPQKPPSGSWFLFNRRVLRYFRNDGFEWQKKKNGKTISEAHERLKVDNMDALNCYYARGDKNPTFQRRIYWMLDPAYEHIVLVHYRDV
Links
Other
CG-1
family TFs
Other
Panicum virgatum
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.Ea03904
Panicum virgatum
Pavir.Ea03904
N
0.956
Si000282m.g
Setaria italica
Si000282m.g
N
0.930
GRMZM2G171600
Zea mays
GRMZM2G171600
N
0.930
Sb03g044220
Sorghum bicolor
Sb03g044220
N
0.921
OPUNC01G30710
Oryza punctata
OPUNC01G30710
N
0.807
ORGLA01G0362300
Oryza glaberrima
ORGLA01G0362300
N
0.807
ORUFI01G45640
Oryza rufipogon
ORUFI01G45640
N
0.807
OS01G0923600
Oryza sativa
OS01G0923600
N
0.807
BGIOSGA005081
Oryza indica
BGIOSGA005081
N
0.807
ONIVA01G48300
Oryza nivara
ONIVA01G48300
N
0.807
OGLUM01G46490
Oryza glumaepatula
OGLUM01G46490
N
0.807
LPERR01G36780
Leersia perrieri
LPERR01G36780
N
0.807
OLONG_000721
Oryza longistaminata
OLONG_000721
N
0.807
OBART01G42220
Oryza barthii
OBART01G42220
N
0.798
BRADI2G59137
Brachypodium distachyon
BRADI2G59137
N
0.789
OMERI01G39250
Oryza meridionalis
OMERI01G39250
N
0.787
OB01G51140
Oryza brachyantha
OB01G51140
N
0.781
TRIUR3_22499
Triticum urartu
TRIUR3_22499
N
0.778
TRAES3BF011000010CFD_g
Triticum aestivum
TRAES3BF011000010CFD_g
N
0.763
Traes_3AL_8EF6D8BB1
Triticum aestivum
Traes_3AL_8EF6D8BB1
N
0.754
F775_16453
Aegilops tauschii
F775_16453
N
0.746
Traes_3DL_663081CEA
Triticum aestivum
Traes_3DL_663081CEA
N
0.746
GSMUA_Achr8G00680_001
Musa acuminata
GSMUA_Achr8G00680_001
N
0.716