CSP4 (Arabidopsis thaliana)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 AT2G21060 T164270_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Encodes a glycine-rich protein that binds nucleic acids and promotes DNA melting. Its transcript and protein levels are up-regulated in response to cold treatment with protein levels peaking earlier in shoots (~10-14 days) than in roots (~21 days). It is normally expressed in meristematic regions and developing tissues where cell division occurs. RNAi and antisense lines with lower levels of CSP2/GRP2 transcripts flower earlier than wild type plants and have some defects in anther and seed development.

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CSP4
M01902_2.00
Arabidopsis thaliana
AAWAAAAM

KTTTTWTT
PBM
Weirauch et al.(2014)
pTH7494
(Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M01902_2.00 CSD 15 81

DNA Binding Domains

Protein ID Domain From To Sequence
AT2G21060.1 CSD 15 81

Links

Other CSD family TFs
Other Arabidopsis thaliana TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.924
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.909
Bra030325 Brassica rapa Bra030325 I 0.894
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.894
Bo3g141510 Brassica oleracea Bo3g141510 I 0.879
CSP2 Arabidopsis thaliana AT4G38680 I 0.879
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.864
Bo4g145670 Brassica oleracea Bo4g145670 I 0.864
Bo8g102040 Brassica oleracea Bo8g102040 I 0.864
Bra031159 Brassica rapa Bra031159 I 0.864
Bo7g049880 Brassica oleracea Bo7g049880 I 0.788
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.742
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.742
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.742
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.727
mgf015980m Mimulus guttatus mgf015980m I 0.727
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.727
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.712
Pm020837 Prunus mume Pm020837 I 0.712