Bo7g049880 (Brassica oleracea)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 Bo7g049880 T164294_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo7g049880.1 CSD 12 79

Links

Other CSD family TFs
Other Brassica oleracea TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra030325 Brassica rapa Bra030325 I 0.848
Bra031159 Brassica rapa Bra031159 I 0.818
Bo4g145670 Brassica oleracea Bo4g145670 I 0.818
Bo8g102040 Brassica oleracea Bo8g102040 I 0.818
CSP4 Arabidopsis thaliana AT2G21060 D 0.788
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.773
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.773
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.758
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.758
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.742
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.742
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.742
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.742
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.742
Bo2g119240 Brassica oleracea Bo2g119240 I 0.735
CSP2 Arabidopsis thaliana AT4G38680 I 0.727
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.727
Bo3g141510 Brassica oleracea Bo3g141510 I 0.727
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.727
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.727
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.727
Pavir.Ab00211 Panicum virgatum Pavir.Ab00211 N 0.714
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.712
e_gw1.1.536.1 Chlorella vulgaris e_gw1.1.536.1 N 0.712
fgenesh1_pg.1_#_433 Coccomyxa subellipsoidea C169 fgenesh1_pg.1_#_433 N 0.712
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.712
MDP0000202739 Malus domestica MDP0000202739 N 0.712
MDP0000155077 Malus domestica MDP0000155077 N 0.712
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.712
PK26692.1 Cannabis sativa PK26692.1 I 0.702