YBX3 (Choloepus hoffmanni)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCHOG00000011988 T164461_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
1.000 1.000
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
1.000 1.000
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
1.000 1.000
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
1.000 1.000
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN

NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.818 0.818
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD

HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.773 0.773
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCHOP00000010601 CSD 90 159

Links

Other CSD family TFs
Other Choloepus hoffmanni TFs

411 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
29983.m003131 Ricinus communis 29983.m003131 I 0.000
AMTR_s00058p00133630 Amborella trichopoda AMTR_s00058p00133630 I 0.000
AMTR_s00149p00035260 Amborella trichopoda AMTR_s00149p00035260 I 0.000
Aquca_051_00026 Aquilegia coerulea Aquca_051_00026 I 0.000
GPRI1 Arabidopsis thaliana AT2G20570 D 0.000
GLK2 Arabidopsis thaliana AT5G44190 I 0.000
BGIOSGA002040 Oryza indica BGIOSGA002040 I 0.000
Bo7g003410 Brassica oleracea Bo7g003410 I 0.000
Bo8g102300 Brassica oleracea Bo8g102300 I 0.000
Bostr.3148s0040 Boechera stricta Bostr.3148s0040 I 0.000
Bostr.7903s0106 Boechera stricta Bostr.7903s0106 I 0.000
Bra031129 Brassica rapa Bra031129 I 0.000
Bra036015 Brassica rapa Bra036015 I 0.000
Bra036482 Brassica rapa Bra036482 I 0.000
BRADI1G43710 Brachypodium distachyon BRADI1G43710 I 0.000
BRADI2G08287 Brachypodium distachyon BRADI2G08287 I 0.000
Cagra.0381s0008 Capsella grandiflora Cagra.0381s0008 I 0.000
Cagra.2516s0014 Capsella grandiflora Cagra.2516s0014 I 0.000
Carubv10014114m.g Capsella rubella Carubv10014114m.g I 0.000
Carubv10026528m.g Capsella rubella Carubv10026528m.g I 0.000
cassava43649.valid.m1 Manihot esculenta cassava43649.valid.m1 I 0.000
cassava43650.valid.m1 Manihot esculenta cassava43650.valid.m1 I 0.000
cassava9823.m1 Manihot esculenta cassava9823.m1 I 0.000
Ca_02452 Cicer arietinum Ca_02452 I 0.000
Ca_11268 Cicer arietinum Ca_11268 I 0.000
chr2.CM0021.770.nc Lotus japonicus chr2.CM0021.770.nc I 0.000
chr3.CM0160.680.nd Lotus japonicus chr3.CM0160.680.nd I 0.000
Ciclev10015266m.g Citrus clementina Ciclev10015266m.g I 0.000
Cla003791 Citrullus lanatus Cla003791 I 0.000
Cucsa.087530 Cucumis sativus Cucsa.087530 I 0.000
Cucsa.313480 Cucumis sativus Cucsa.313480 I 0.000
estExt_gwp_gw1.C_310256 Physcomitrella patens estExt_gwp_gw1.C_310256 I 0.000
Eucgr.A01857 Eucalyptus grandis Eucgr.A01857 I 0.000
Eucgr.K01056 Eucalyptus grandis Eucgr.K01056 I 0.000
EuGene.0000130210 Micromonas pusilla EuGene.0000130210 I 0.000
e_gw1.1.649.1 Ostreococcus RCC809 e_gw1.1.649.1 I 0.000
F775_20285 Aegilops tauschii F775_20285 I 0.000
fgenesh1_pm.scaffold_311000005 Physcomitrella patens fgenesh1_pm.scaffold_311000005 I 0.000
GPRI1 Arabidopsis lyrata fgenesh2_kg.3__3588__AT2G20570.1 I 0.000
fgenesh2_kg.8__391__AT5G44190.1 Arabidopsis lyrata fgenesh2_kg.8__391__AT5G44190.1 I 0.000
gene17750-v1.0-hybrid Fragaria vesca gene17750-v1.0-hybrid I 0.000
GLYMA01G40900 Glycine max GLYMA01G40900 I 0.000
GLYMA06G44330 Glycine max GLYMA06G44330 I 0.000
GLYMA11G04441 Glycine max GLYMA11G04441 I 0.000
GLYMA12G13430 Glycine max GLYMA12G13430 I 0.000
GLYMA12G33430 Glycine max GLYMA12G33430 I 0.000
GLYMA13G37010 Glycine max GLYMA13G37010 I 0.000
GLYMA17G16360 Glycine max GLYMA17G16360 I 0.000
Gorai.002G020300 Gossypium raimondii Gorai.002G020300 I 0.000
Gorai.008G155000 Gossypium raimondii Gorai.008G155000 I 0.000
Gorai.012G126600 Gossypium raimondii Gorai.012G126600 I 0.000
GRMZM2G026833 Zea mays GRMZM2G026833 I 0.000
GRMZM2G087804 Zea mays GRMZM2G087804 I 0.000
GRMZM2G471600 Zea mays GRMZM2G471600 I 0.000
GSMUA_Achr10G26160_001 Musa acuminata GSMUA_Achr10G26160_001 I 0.000
GSMUA_Achr11G17740_001 Musa acuminata GSMUA_Achr11G17740_001 I 0.000
GSMUA_Achr2G15250_001 Musa acuminata GSMUA_Achr2G15250_001 I 0.000
GSMUA_Achr6G05850_001 Musa acuminata GSMUA_Achr6G05850_001 I 0.000
GSMUA_Achr7G11040_001 Musa acuminata GSMUA_Achr7G11040_001 I 0.000
LPERR01G08320 Leersia perrieri LPERR01G08320 I 0.000
LPERR06G12880 Leersia perrieri LPERR06G12880 I 0.000
Lus10018649.g Linum usitatissimum Lus10018649.g I 0.000
Lus10033642.g Linum usitatissimum Lus10033642.g I 0.000
Lus10039883.g Linum usitatissimum Lus10039883.g I 0.000
MDP0000225179 Malus domestica MDP0000225179 I 0.000
MDP0000526864 Malus domestica MDP0000526864 I 0.000
mgf004257m Mimulus guttatus mgf004257m I 0.000
mgf007181m Mimulus guttatus mgf007181m I 0.000
mgf012846m Mimulus guttatus mgf012846m I 0.000
mgf014879m Mimulus guttatus mgf014879m I 0.000
MLOC_43537 Hordeum vulgare MLOC_43537 I 0.000
MLOC_65876 Hordeum vulgare MLOC_65876 I 0.000
MTR_2g090675 Medicago truncatula MTR_2g090675 I 0.000
MTR_4g078810 Medicago truncatula MTR_4g078810 I 0.000
OB01G18980 Oryza brachyantha OB01G18980 I 0.000
OB06G22250 Oryza brachyantha OB06G22250 I 0.000
OBART03G02540 Oryza barthii OBART03G02540 I 0.000
OGLUM01G10130 Oryza glumaepatula OGLUM01G10130 I 0.000
OGLUM06G15080 Oryza glumaepatula OGLUM06G15080 I 0.000
OMERI01G08840 Oryza meridionalis OMERI01G08840 I 0.000
OMERI06G15340 Oryza meridionalis OMERI06G15340 I 0.000
ONIVA01G11450 Oryza nivara ONIVA01G11450 I 0.000
ONIVA06G16920 Oryza nivara ONIVA06G16920 I 0.000
OPUNC01G08680 Oryza punctata OPUNC01G08680 I 0.000
OPUNC06G13180 Oryza punctata OPUNC06G13180 I 0.000
orange1.1g013528m.g Citrus sinensis orange1.1g013528m.g I 0.000
ORGLA01G0079000 Oryza glaberrima ORGLA01G0079000 I 0.000
ORGLA06G0126200 Oryza glaberrima ORGLA06G0126200 I 0.000
ORUFI01G09620 Oryza rufipogon ORUFI01G09620 I 0.000
ORUFI06G15000 Oryza rufipogon ORUFI06G15000 I 0.000
GLK2 Oryza sativa OS01G0239000 I 0.000
GLK1 Oryza sativa OS06G0348800 I 0.000
Pavir.Db01285 Panicum virgatum Pavir.Db01285 I 0.000
Pavir.Ea00014 Panicum virgatum Pavir.Ea00014 I 0.000
Pavir.Eb00063 Panicum virgatum Pavir.Eb00063 I 0.000
Pavir.J11422 Panicum virgatum Pavir.J11422 I 0.000
PDK_20s1662851g001 Phoenix dactylifera PDK_20s1662851g001 I 0.000
PGSC0003DMG400009378 Solanum tuberosum PGSC0003DMG400009378 I 0.000
PGSC0003DMG400028100 Solanum tuberosum PGSC0003DMG400028100 I 0.000
PK27491.1 Cannabis sativa PK27491.1 I 0.000
Pm014123 Prunus mume Pm014123 I 0.000
POPTR_0007s01230 Populus trichocarpa POPTR_0007s01230 I 0.000
POPTR_0017s04720 Populus trichocarpa POPTR_0017s04720 I 0.000
PRUPE_ppa014599mg Prunus persica PRUPE_ppa014599mg I 0.000
SapurV1A.0118s0260 Salix purpurea SapurV1A.0118s0260 I 0.000
SapurV1A.0693s0070 Salix purpurea SapurV1A.0693s0070 I 0.000
SapurV1A.1950s0030 Salix purpurea SapurV1A.1950s0030 I 0.000
Sb03g000400 Sorghum bicolor Sb03g000400 I 0.000
Sb10g008400 Sorghum bicolor Sb10g008400 I 0.000
Si001336m.g Setaria italica Si001336m.g I 0.000
Si006400m.g Setaria italica Si006400m.g I 0.000
Solyc07g053630.2 Solanum lycopersicum Solyc07g053630.2 I 0.000
Solyc10g080960.1 Solanum lycopersicum Solyc10g080960.1 I 0.000
TCM_008193 Theobroma cacao TCM_008193 I 0.000
Thhalv10001986m.g Eutrema salsugineum Thhalv10001986m.g I 0.000
Thhalv10003223m.g Eutrema salsugineum Thhalv10003223m.g I 0.000
TRAES3BF062500050CFD_g Triticum aestivum TRAES3BF062500050CFD_g I 0.000
Traes_7DL_58DDB90E3 Triticum aestivum Traes_7DL_58DDB90E3 I 0.000
TRIUR3_15856 Triticum urartu TRIUR3_15856 I 0.000
GPRI1 Vitis vinifera VIT_12s0028g03100 I 0.000