LIN28B (Callithrix jacchus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCJAG00000001671 T164468_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
1.000 1.000
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002998 CSD 30 102

Links

Other CSD family TFs
Other Callithrix jacchus TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
COCC4DRAFT_26180 Bipolaris maydis COCC4DRAFT_26180 N 0.000
COCCADRAFT_98602 Bipolaris zeicola COCCADRAFT_98602 N 0.000
COCMIDRAFT_93206 Bipolaris oryzae COCMIDRAFT_93206 N 0.000
COCSADRAFT_145954 Bipolaris sorokiniana COCSADRAFT_145954 N 0.000
COCVIDRAFT_110292 Bipolaris victoriae COCVIDRAFT_110292 N 0.000
LEMA_P085190.1 Leptosphaeria maculans LEMA_P085190.1 N 0.000
PTRG_05102 Pyrenophora triticirepentis PTRG_05102 N 0.000
SETTUDRAFT_110184 Setosphaeria turcica SETTUDRAFT_110184 N 0.000