LIN28B (Callithrix jacchus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCJAG00000001671 T164468_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
1.000 1.000
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002998 CSD 30 102

Links

Other CSD family TFs
Other Callithrix jacchus TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R002277 Calypte anna Aan_R002277 I 0.894
Aan_R005866 Calypte anna Aan_R005866 I 0.864
Aan_R007025 Calypte anna Aan_R007025 I 0.970
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.970
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.946
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.894
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.946
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.879
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.946
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.864
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 1.000
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.864
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.864
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.833
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.848
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.970
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.864
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.818
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.864
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.985
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.742
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.773
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.833
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.848
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.864
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 1.000
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.864
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.970
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.864
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.833
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.773
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.831
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.894
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.939
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.879
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.864
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.864
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 1.000
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.864
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 1.000
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 1.000
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.864
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.864
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 1.000
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.831
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.864
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.985
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.864
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.766
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.864
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.864
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.873
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.877
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.864
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 1.000
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.864
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.894
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.848
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.864
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 1.000
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.985
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.968
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.985
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.985
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.864
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.946
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.985
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.864
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.864
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.833
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.892
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.946
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.970
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.758
LIN28A Equus caballus ENSECAG00000020267 I 0.864
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.864
lin28a Danio rerio ENSDARG00000016999 I 0.860
LIN28A Danio rerio ENSDARG00000004328 I 0.862
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.864
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.800
LIN28A Canis familiaris ENSCAFG00000012488 I 0.864
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.848
LIN28A Sus scrofa ENSSSCG00000003557 I 0.864
lin28a Xenopus tropicalis XB-GENE-491384 I 0.848
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.864
LIN28A Felis catus ENSFCAG00000012810 I 0.864
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.797
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.788
Lin28a Mus musculus ENSMUSG00000050966 I 0.873
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.848
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.864
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.864
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.864
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.864
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.864
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.803
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.864
LIN28A Homo sapiens ENSG00000131914 I 0.864
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.864
lin28a.S Xenopus laevis XB-GENE-866059 I 0.818
LIN28B Gorilla gorilla ENSGGOG00000015437 I 1.000
LIN28B Gallus gallus ENSGALG00000026761 I 0.924
LIN28B Echinops telfairi ENSETEG00000015340 I 0.970
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.848
LIN28B Homo sapiens ENSG00000187772 D 1.000
LIN28B Felis catus ENSFCAG00000005058 I 1.000
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.955
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.970
LIN28B Bos taurus ENSBTAG00000043973 I 1.000
LIN28B Equus caballus ENSECAG00000020994 I 0.985
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 1.000
lin28b Danio rerio ENSDARG00000052511 I 0.833
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.985
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 1.000
LIN28B Canis familiaris ENSCAFG00000003598 I 1.000
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.970
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.909
LIN28B Loxodonta africana ENSLAFG00000017788 I 1.000
LIN28B Myotis lucifugus ENSMLUG00000006883 I 1.000
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.894
LIN28B Sorex araneus ENSSARG00000008374 I 1.000
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 1.000
LIN28B Pan troglodytes ENSPTRG00000018453 I 1.000
LIN28B Oryzias latipes ENSORLG00000012891 I 0.864
LIN28B Ochotona princeps ENSOPRG00000006333 I 1.000
LIN28B Otolemur garnettii ENSOGAG00000011042 I 1.000
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 1.000
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.848
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.985
LIN28B Macaca mulatta ENSMMUG00000014470 I 1.000
Lin28b Mus musculus ENSMUSG00000063804 I 0.894
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.955
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.864
LIN28B Tursiops truncatus ENSTTRG00000014919 I 1.000
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.894
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.864
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 1.000
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.919
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.985
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.864
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.879
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.894
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.848
yakG040859 Bos grunniens yakG040859 I 0.833