LIN28B (Callithrix jacchus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSCJAG00000001671 T164468_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
1.000 1.000
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
1.000 1.000
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSCJAP00000002998 CSD 30 102

Links

Other CSD family TFs
Other Callithrix jacchus TFs

144 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSAMEG00000018666 Ailuropoda melanoleuca ENSAMEG00000018666 I 0.000
ENSAPLG00000011428 Anas platyrhynchos ENSAPLG00000011428 I 0.000
ZBED1 Anolis carolinensis ENSACAG00000023513 I 0.000
Afo_R005396 Aptenodytes forsteri Afo_R005396 I 0.000
ENSP00000370620-D1 Bos grunniens ENSP00000370620-D1 I 0.000
ZBED1 Bos taurus ENSBTAG00000024641 I 0.000
Brh_R008630 Buceros rhinoceros Brh_R008630 I 0.000
Aan_R008132 Calypte anna Aan_R008132 I 0.000
Cmyd_10021612 Chelonia mydas Cmyd_10021612 I 0.000
ENSCSAG00000019527 Chlorocebus sabaeus ENSCSAG00000019527 I 0.000
ZBED1 Dasypus novemcinctus ENSDNOG00000012869 I 0.000
ZBED1 Felis catus ENSFCAG00000012522 I 0.000
ENSFALG00000015033 Ficedula albicollis ENSFALG00000015033 I 0.000
ENSGALG00000028601 Gallus gallus ENSGALG00000028601 I 0.000
Gfo_R009655 Geospiza fortis Gfo_R009655 I 0.000
ZBED1 Gorilla gorilla ENSGGOG00000011706 I 0.000
ZBED1 Homo sapiens ENSG00000214717 D 0.000
ENSLACG00000011306 Latimeria chalumnae ENSLACG00000011306 I 0.000
ZBED1 Loxodonta africana ENSLAFG00000013332 I 0.000
ENSP00000370620 Macaca fascicularis ENSP00000370620 I 0.000
ZBED1 Macaca mulatta ENSMMUG00000007514 I 0.000
ZBED1 Meleagris gallopavo ENSMGAG00000015483 I 0.000
ENSNLEG00000018727 Nomascus leucogenys ENSNLEG00000018727 I 0.000
ENSONIG00000007347 Oreochromis niloticus ENSONIG00000007347 I 0.000
ZBED1 Ornithorhynchus anatinus ENSOANG00000010515 I 0.000
ZBED1 Oryctolagus cuniculus ENSOCUG00000023740 I 0.000
ENSOARG00000008137 Ovis aries ENSOARG00000008137 I 0.000
ENSPANG00000011132 Papio anubis ENSPANG00000011132 I 0.000
ENSPSIG00000002047 Pelodiscus sinensis ENSPSIG00000002047 I 0.000
Pvit_08935 Pogona vitticeps Pvit_08935 I 0.000
ENSPPYG00000020088 Pongo abelii ENSPPYG00000020088 I 0.000
ENSSHAG00000012608 Sarcophilus harrisii ENSSHAG00000012608 I 0.000
Tal_R000939 Tyto alba Tal_R000939 I 0.000
XP_002933665 Xenopus tropicalis XP_002933665 I 0.000
XP_002941050 Xenopus tropicalis XP_002941050 I 0.000