lin28a (Danio rerio)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSDARG00000016999 T164508_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable RNA binding activity and polysome binding activity. Acts upstream of or within chordate embryonic development; negative regulation of gene expression; and regeneration. Predicted to be located in P-body; cytoplasmic stress granule; and nucleus. Predicted to be part of polysome. Is expressed in several structures, including Kupffer's vesicle; central nervous system; digestive system; neural plate; and neural tube. Orthologous to human LIN28A (lin-28 homolog A). [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.848 0.848
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.860 0.860
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000089741 CSD 34 106
ENSDARP00000113422 CSD 28 100
ENSDARP00000116507 CSD 39 102
ENSDARP00000125674 CSD 26 98
ENSDARP00000137336 CSD 39 111

Links

Other CSD family TFs
Other Danio rerio TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.965
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.947
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.930
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.930
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.930
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.924
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.924
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.912
Aan_R005866 Calypte anna Aan_R005866 I 0.912
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.912
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.912
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.912
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.909
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.909
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.895
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.895
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.895
Lin28a Mus musculus ENSMUSG00000050966 I 0.895
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.895
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.895
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.895
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.895
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.895
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.895
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.895
LIN28A Sus scrofa ENSSSCG00000003557 I 0.895
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.895
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.895
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.895
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.895
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.895
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.895
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.895
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.895
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.895
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.895
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.895
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.895
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.895
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.895
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.895
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.895
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.895
LIN28A Equus caballus ENSECAG00000020267 I 0.895
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.895
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.895
LIN28A Felis catus ENSFCAG00000012810 I 0.895
LIN28A Canis familiaris ENSCAFG00000012488 I 0.895
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.895
lin28a.S Xenopus laevis XB-GENE-866059 I 0.895
LIN28A Homo sapiens ENSG00000131914 I 0.895
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.894
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.894
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.894
lin28a Xenopus tropicalis XB-GENE-491384 I 0.894
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.879
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.879
yakG040859 Bos grunniens yakG040859 I 0.879
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.877
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.877
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.877
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.877
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.867
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.864
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.864
LIN28A Danio rerio ENSDARG00000004328 I 0.864
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.864
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.864
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.864
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.864
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.864
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.864
lin28b Danio rerio ENSDARG00000052511 I 0.864
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.860
LIN28B Canis familiaris ENSCAFG00000003598 I 0.860
LIN28B Sorex araneus ENSSARG00000008374 I 0.860
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.860
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.860
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.860
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.860
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.860
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.860
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.860
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.860
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.860
LIN28B Homo sapiens ENSG00000187772 D 0.860
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.860
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.860
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.860
LIN28B Felis catus ENSFCAG00000005058 I 0.860
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.860
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.860
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.860
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.860
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.860
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.860
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.860
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.860
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.860
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.860
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.860
LIN28B Equus caballus ENSECAG00000020994 I 0.860
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.860
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.860
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.848
Aan_R007025 Calypte anna Aan_R007025 I 0.848
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.848
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.848
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.848
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.848
LIN28B Oryzias latipes ENSORLG00000012891 I 0.848
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.848
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.848
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.848
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.848
LIN28B Gallus gallus ENSGALG00000026761 I 0.842
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.833
LIN28B Echinops telfairi ENSETEG00000015340 I 0.833
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.818
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.818
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.818
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.807
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.807
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.806
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.788
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.773
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.773
Lin28b Mus musculus ENSMUSG00000063804 I 0.773
Aan_R002277 Calypte anna Aan_R002277 I 0.773
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.758
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.758
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.730
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.730
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.730
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.730
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.730
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.727
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.727
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.727
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.727
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.703