lin28b (Danio rerio)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSDARG00000052511 T164510_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.833 0.833
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000102537 CSD 23 95

Links

Other CSD family TFs
Other Danio rerio TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.985
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.939
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.927
LIN28B Oryzias latipes ENSORLG00000012891 I 0.924
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.924
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.924
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.909
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.909
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.894
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.879
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.879
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.865
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.865
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.865
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.865
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.865
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.865
LIN28B Bos taurus ENSBTAG00000043973 I 0.865
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.864
lin28a Danio rerio ENSDARG00000016999 I 0.864
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.864
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.864
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.864
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.864
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.864
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.848
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.848
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.848
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.848
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.848
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.848
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.848
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.848
LIN28B Equus caballus ENSECAG00000020994 I 0.848
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.846
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.838
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.836
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.836
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.836
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.833
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.833
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.833
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.833
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.833
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.833
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.833
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.833
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.833
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.833
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.833
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.833
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.833
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.833
lin28a Xenopus tropicalis XB-GENE-491384 I 0.833
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.833
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.833
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.833
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.833
LIN28B Canis familiaris ENSCAFG00000003598 I 0.833
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.833
Aan_R005866 Calypte anna Aan_R005866 I 0.833
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.833
LIN28B Gallus gallus ENSGALG00000026761 I 0.833
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.833
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.833
lin28a.S Xenopus laevis XB-GENE-866059 I 0.833
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.833
LIN28B Felis catus ENSFCAG00000005058 I 0.833
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.833
LIN28B Echinops telfairi ENSETEG00000015340 I 0.833
LIN28B Homo sapiens ENSG00000187772 D 0.833
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.833
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.833
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.833
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.833
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.833
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.833
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.833
Aan_R007025 Calypte anna Aan_R007025 I 0.833
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.833
LIN28B Sorex araneus ENSSARG00000008374 I 0.833
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.833
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.833
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.833
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.818
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.818
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.818
yakG040859 Bos grunniens yakG040859 I 0.818
LIN28A Sus scrofa ENSSSCG00000003557 I 0.803
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.803
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.803
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.803
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.803
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.803
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.803
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.803
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.803
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.803
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.803
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.803
LIN28A Homo sapiens ENSG00000131914 I 0.803
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.803
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.803
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.803
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.803
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.803
LIN28A Felis catus ENSFCAG00000012810 I 0.803
LIN28A Equus caballus ENSECAG00000020267 I 0.803
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.803
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.803
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.803
LIN28A Canis familiaris ENSCAFG00000012488 I 0.803
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.803
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.803
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.803
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.803
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.803
Lin28a Mus musculus ENSMUSG00000050966 I 0.803
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.803
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.803
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.803
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.803
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.803
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.803
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.803
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.803
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.803
LIN28A Danio rerio ENSDARG00000004328 I 0.800
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.800
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.788
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.788
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.788
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.774
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.773
Lin28b Mus musculus ENSMUSG00000063804 I 0.773
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.773
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.769
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.767
Aan_R002277 Calypte anna Aan_R002277 I 0.758
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.758
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.734
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.703