lin28b (Danio rerio)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSDARG00000052511 T164510_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.833 0.833
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000102537 CSD 23 95

Links

Other CSD family TFs
Other Danio rerio TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AAEL011013 Aedes aegypti AAEL011013 I 0.000
AALB007758 Anopheles albimanus AALB007758 I 0.000
AALB007964 Anopheles albimanus AALB007964 I 0.000
AARA003714 Anopheles arabiensis AARA003714 I 0.000
AATE009363 Anopheles atroparvus AATE009363 I 0.000
AATE015141 Anopheles atroparvus AATE015141 I 0.000
ACHR006645 Anopheles christyi ACHR006645 I 0.000
ACOM023265 Anopheles coluzzii ACOM023265 I 0.000
ACOM027359 Anopheles coluzzii ACOM027359 I 0.000
ACUA025040 Anopheles culicifacies ACUA025040 I 0.000
ADAC005208 Anopheles darlingi ADAC005208 I 0.000
ADIR001121 Anopheles dirus ADIR001121 I 0.000
ADIR009318 Anopheles dirus ADIR009318 I 0.000
AFAF010850 Anopheles farauti AFAF010850 I 0.000
AFAF014618 Anopheles farauti AFAF014618 I 0.000
AFUN000102 Anopheles funestus AFUN000102 I 0.000
AGAP010058 Anopheles gambiae AGAP010058 I 0.000
AMEC021622 Anopheles melas AMEC021622 I 0.000
AMEM005407 Anopheles merus AMEM005407 I 0.000
AMIN006671 Anopheles minimus AMIN006671 I 0.000
AQUA009218 Anopheles quadriannulatus AQUA009218 I 0.000
ASIS004049 Anopheles sinensis ASIS004049 I 0.000
ASTEI03921 Anopheles stephensi ASTEI03921 I 0.000
BGIBMGA003821 Bombyx mori BGIBMGA003821 I 0.000
CPIJ009948 Culex quinquefasciatus CPIJ009948 I 0.000
CpipJ_CPIJ009948 Culex pipiens CpipJ_CPIJ009948 I 0.000
DAPPUDRAFT_311851 Daphnia pulex DAPPUDRAFT_311851 I 0.000
sim Drosophila melanogaster FBgn0004666 D 0.000
sim Drosophila virilis FBgn0014842 I 0.000
GF17581 Drosophila ananassae FBgn0094599 I 0.000
GG19445 Drosophila erecta FBgn0111648 I 0.000
GH18379 Drosophila grimshawi FBgn0125847 I 0.000
GI23369 Drosophila mojavensis FBgn0146095 I 0.000
GL24392 Drosophila persimilis FBgn0161981 I 0.000
GD18883 Drosophila simulans FBgn0190394 I 0.000
GK22407 Drosophila willistoni FBgn0224386 I 0.000
GA26599 Drosophila pseudoobscura FBgn0247972 I 0.000
HMEL008134 Heliconius melpomene HMEL008134 I 0.000
KGM_03494 Danaus plexippus KGM_03494 I 0.000
LCUP006648 Lucilia cuprina LCUP006648 I 0.000
LDEC014245 Leptinotarsa decemlineata LDEC014245 I 0.000
MDOA008891 Musca domestica MDOA008891 I 0.000
MESCA003744 Megaselia scalaris MESCA003744 I 0.000
MESCA004927 Megaselia scalaris MESCA004927 N 0.000
TC016204 Tribolium castaneum TC016204 I 0.000
YQE_07686 Dendroctonus ponderosae YQE_07686 I 0.000