lin28b (Danio rerio)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSDARG00000052511 T164510_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.833 0.833
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.833 0.833
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000102537 CSD 23 95

Links

Other CSD family TFs
Other Danio rerio TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
KLTH0A00484g Kluyveromyces thermotolerans KLTH0A00484g N 0.000
KLTH0E00176g Kluyveromyces thermotolerans KLTH0E00176g N 0.000
KLTH0E00176g Lachancea thermotolerans KLTH0E00176g N 0.000