LIN28B (Equus caballus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSECAG00000020994 T164532_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.985 0.985
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.985 0.985
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSECAP00000018401 CSD 28 100

Links

Other CSD family TFs
Other Equus caballus TFs

147 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R002277 Calypte anna Aan_R002277 I 0.879
Aan_R005866 Calypte anna Aan_R005866 I 0.864
Aan_R007025 Calypte anna Aan_R007025 I 0.955
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.955
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.946
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.909
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.946
Cmyd_10006225 Chelonia mydas Cmyd_10006225 I 0.789
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.894
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.955
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.946
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.864
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.985
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.879
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.879
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.833
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.864
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.955
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.864
LIN28B Bos taurus ENSBTAG00000043973 I 1.000
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.818
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.864
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 1.000
LIN28B Canis familiaris ENSCAFG00000003598 I 0.985
LIN28A Canis familiaris ENSCAFG00000012488 I 0.864
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.985
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.800
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.985
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.864
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.742
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.773
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.833
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.970
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.848
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.864
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.982
LIN28A Danio rerio ENSDARG00000004328 I 0.862
lin28a Danio rerio ENSDARG00000016999 I 0.860
lin28b Danio rerio ENSDARG00000052511 I 0.848
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.864
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.985
LIN28A Equus caballus ENSECAG00000020267 I 0.864
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.985
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.797
LIN28B Echinops telfairi ENSETEG00000015340 I 0.985
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.864
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.955
LIN28B Felis catus ENSFCAG00000005058 I 0.985
LIN28A Felis catus ENSFCAG00000012810 I 0.864
LIN28A Homo sapiens ENSG00000131914 I 0.864
LIN28B Homo sapiens ENSG00000187772 D 0.985
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.818
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.864
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.848
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.864
LIN28B Gallus gallus ENSGALG00000026761 I 0.939
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.985
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.864
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.848
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.773
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.831
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.879
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.955
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.864
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.985
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.864
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.864
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.864
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.864
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.946
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.985
LIN28B Myotis lucifugus ENSMLUG00000006883 I 1.000
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.864
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.985
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.985
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.848
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.970
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.985
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.864
Lin28a Mus musculus ENSMUSG00000050966 I 0.873
Lin28b Mus musculus ENSMUSG00000063804 I 0.894
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.864
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.985
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.970
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.831
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.864
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 1.000
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.864
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.766
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.982
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.864
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.864
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.864
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.985
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.855
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.892
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.864
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.985
LIN28B Oryzias latipes ENSORLG00000012891 I 0.848
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.879
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.864
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.985
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.864
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.879
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.833
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.864
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.985
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.970
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.848
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.985
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.985
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.864
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.894
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.864
LIN28B Sorex araneus ENSSARG00000008374 I 0.985
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.935
LIN28A Sus scrofa ENSSSCG00000003557 I 0.864
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 1.000
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.970
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.864
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.946
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.955
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.758
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.848
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.879
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.848
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.803
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 1.000
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.864
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.864
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.985
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.864
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.818
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.877
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.946
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.955
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.864
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.982
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.919
Ogr14286 Ophisaurus gracilis Ogr14286 I 1.000
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.970
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.892
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.924
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.909
lin28a Xenopus tropicalis XB-GENE-491384 I 0.848
lin28a.S Xenopus laevis XB-GENE-866059 I 0.818
yakG040859 Bos grunniens yakG040859 I 0.833