CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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ENSLACG00000004053
(
Latimeria chalumnae
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
ENSLACG00000004053
T164596_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.871
0.871
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.778
0.778
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLACP00000004553
CSD
57
129
GAGHCKWFNVRMGFGFISMTSREGSPLDNPVDVFVHQSKLYMEGFRSLKEGEPVEFTFKKSSKGLESIRVTGP
ENSLACP00000004554
CSD
45
87
GAGHCKWFNVRMGFGFISMTSREGSPLDNPVDVFVHQVRLHFS
ENSLACP00000004555
CSD
54
91
GAGHCKWFNVRMGFGFISMTSREGSPLDNPVDVFVHQV
Links
Other
CSD
family TFs
Other
Latimeria chalumnae
TFs
157 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy