CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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YBX3
(
Oryctolagus cuniculus
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
ENSOCUG00000001889
T164681_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR
YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.820
0.820
YBX1
M10411_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.820
0.820
YBX1
M10412_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.820
0.820
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD
HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.820
0.820
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSOCUP00000019910
CSD
70
134
KERERKSGVGWAQENDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGP
Links
Other
CSD
family TFs
Other
Oryctolagus cuniculus
TFs
246 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
YBX3
Tursiops truncatus
ENSTTRG00000008045
I
1.000
Cmyd_10003103
Chelonia mydas
Cmyd_10003103
I
1.000
ENSMEUG00000009893
Macropus eugenii
ENSMEUG00000009893
I
1.000
Tal_R003478
Tyto alba
Tal_R003478
I
0.973
ENSGGOG00000004758
Gorilla gorilla
ENSGGOG00000004758
I
0.959
YBX1
Homo sapiens
ENSG00000065978
D
0.959
Myotis_brandtii_YBX1_10016780
Myotis brandtii
Myotis_brandtii_YBX1_10016780
I
0.958
ENSSHAG00000011350
Sarcophilus harrisii
ENSSHAG00000011350
I
0.952
Alligator_sinensis_CCG014301.1
Alligator sinensis
Alligator_sinensis_CCG014301.1
I
0.949
YBX3
Gorilla gorilla
ENSGGOG00000001352
I
0.940
YBX3
Pan troglodytes
ENSPTRG00000004681
I
0.940
Pvit_07856
Pogona vitticeps
Pvit_07856
I
0.904
YBX2
Loxodonta africana
ENSLAFG00000014006
I
0.902
ENSOCUG00000000147
Oryctolagus cuniculus
ENSOCUG00000000147
I
0.882
ENSFALG00000010305
Ficedula albicollis
ENSFALG00000010305
I
0.870
ENSMPUG00000011810
Mustela putorius furo
ENSMPUG00000011810
I
0.824
ENSNLEG00000012324
Nomascus leucogenys
ENSNLEG00000012324
I
0.820
Ybx3
Mus musculus
ENSMUSG00000030189
I
0.820
CAA42778
Xenopus laevis
CAA42778
I
0.820
ENSOANG00000001663
Ornithorhynchus anatinus
ENSOANG00000001663
I
0.820
ENSOARG00000020447
Ovis aries
ENSOARG00000020447
I
0.820
AAI30161
Xenopus laevis
AAI30161
I
0.820
YBX1
Otolemur garnettii
ENSOGAG00000006784
I
0.820
ENSOARG00000020919
Ovis aries
ENSOARG00000020919
I
0.820
YBX1
Ornithorhynchus anatinus
ENSOANG00000011725
I
0.820
YBX3
Meleagris gallopavo
ENSMGAG00000014224
I
0.820
YBX3
Loxodonta africana
ENSLAFG00000017247
I
0.820
ENSLOCG00000002530
Lepisosteus oculatus
ENSLOCG00000002530
I
0.820
ENSLAFG00000007597
Loxodonta africana
ENSLAFG00000007597
I
0.820
ENSLACG00000018135
Latimeria chalumnae
ENSLACG00000018135
I
0.820
ENSGALG00000018512
Gallus gallus
ENSGALG00000018512
I
0.820
ENSONIG00000002062
Oreochromis niloticus
ENSONIG00000002062
I
0.820
YBX1
Meleagris gallopavo
ENSMGAG00000006879
I
0.820
YBX3
Macaca mulatta
ENSMMUG00000022469
I
0.820
ENSMMUG00000013136
Macaca mulatta
ENSMMUG00000013136
I
0.820
ENSMICG00000014984
Microcebus murinus
ENSMICG00000014984
I
0.820
YBX1
Gallus gallus
ENSGALG00000004848
I
0.820
YBX1
Monodelphis domestica
ENSMODG00000017214
I
0.820
ENSPANG00000016576
Papio anubis
ENSPANG00000016576
I
0.820
YBX1
Vicugna pacos
ENSVPAG00000000068
I
0.820
ENSXMAG00000018674
Xiphophorus maculatus
ENSXMAG00000018674
I
0.820
ybx1
Takifugu rubripes
ENSTRUG00000015333
I
0.820
ybx1
Tetraodon nigroviridis
ENSTNIG00000011989
I
0.820
YBX3
Taeniopygia guttata
ENSTGUG00000012047
I
0.820
YBX1
Taeniopygia guttata
ENSTGUG00000017262
I
0.820
Pvit_10025
Pogona vitticeps
Pvit_10025
I
0.820
Aan_R001440
Calypte anna
Aan_R001440
I
0.820
ENSP00000228251
Macaca fascicularis
ENSP00000228251
I
0.820
Gfo_R007354
Geospiza fortis
Gfo_R007354
I
0.820
ENSBTAP00000012735-D1
Bos grunniens
ENSBTAP00000012735-D1
I
0.820
Brh_R007443
Buceros rhinoceros
Brh_R007443
I
0.820
Aan_R014295
Calypte anna
Aan_R014295
I
0.820
Afo_R014263
Aptenodytes forsteri
Afo_R014263
I
0.820
YBX3
Tupaia belangeri
ENSTBEG00000012570
I
0.820
YBX3
Sus scrofa
ENSSSCG00000000633
I
0.820
ENSPFOG00000011441
Poecilia formosa
ENSPFOG00000011441
I
0.820
ENSPPYG00000004279
Pongo abelii
ENSPPYG00000004279
I
0.820
ybx1
Gasterosteus aculeatus
ENSGACG00000006447
I
0.820
ENSPANG00000013156
Papio anubis
ENSPANG00000013156
I
0.820
ybx1
Oryzias latipes
ENSORLG00000004225
I
0.820
ENSPANG00000010280
Papio anubis
ENSPANG00000010280
I
0.820
ENSPSIG00000009247
Pelodiscus sinensis
ENSPSIG00000009247
I
0.820
ENSPSIG00000011017
Pelodiscus sinensis
ENSPSIG00000011017
I
0.820
Ybx1
Rattus norvegicus
ENSRNOG00000023786
I
0.820
ENSSHAG00000014452
Sarcophilus harrisii
ENSSHAG00000014452
I
0.820
Ybx3
Rattus norvegicus
ENSRNOG00000005480
I
0.820
YBX3
Pteropus vampyrus
ENSPVAG00000006740
I
0.820
YBX1
Pteropus vampyrus
ENSPVAG00000005504
I
0.820
AAH42217
Xenopus laevis
AAH42217
I
0.820
Ybx1
Mus musculus
ENSMUSG00000028639
I
0.820
YBX1
Cavia porcellus
ENSCPOG00000010888
I
0.820
ENSCJAG00000021660
Callithrix jacchus
ENSCJAG00000021660
I
0.820
YBX3
Homo sapiens
ENSG00000060138
I
0.820
YBX3
Choloepus hoffmanni
ENSCHOG00000011988
I
0.820
YBX3
Cavia porcellus
ENSCPOG00000011329
I
0.820
ENSCSAG00000008744
Chlorocebus sabaeus
ENSCSAG00000008744
I
0.820
Ybx3
Dipodomys ordii
ENSDORG00000009103
I
0.820
ybx1
Xenopus tropicalis
XB-GENE-480746
I
0.820
ybx1
Danio rerio
ENSDARG00000004757
I
0.820
ybx2.L
Xenopus laevis
XB-GENE-6252609
I
0.820
YBX3
Canis familiaris
ENSCAFG00000013401
I
0.820
ENSAMXG00000014478
Astyanax mexicanus
ENSAMXG00000014478
I
0.820
ybx1.S
Xenopus laevis
XB-GENE-865405
I
0.820
ENSAMEG00000009393
Ailuropoda melanoleuca
ENSAMEG00000009393
I
0.820
ENSAMEG00000000494
Ailuropoda melanoleuca
ENSAMEG00000000494
I
0.820
ENSAPLG00000003147
Anas platyrhynchos
ENSAPLG00000003147
I
0.820
ENSAPLG00000004899
Anas platyrhynchos
ENSAPLG00000004899
I
0.820
YBX1
Canis familiaris
ENSCAFG00000002541
I
0.820
YBX1
Bos taurus
ENSBTAG00000017368
I
0.820
YBX3
Bos taurus
ENSBTAG00000009663
I
0.820
ENSECAG00000008961
Equus caballus
ENSECAG00000008961
I
0.820
ENSCJAG00000003155
Callithrix jacchus
ENSCJAG00000003155
I
0.820
YBX3
Echinops telfairi
ENSETEG00000002557
I
0.820
YBX3
Equus caballus
ENSECAG00000013777
I
0.820
ENSECAG00000023592
Equus caballus
ENSECAG00000023592
I
0.820
YBX3
Erinaceus europaeus
ENSEEUG00000010415
I
0.820
ENSFALG00000003661
Ficedula albicollis
ENSFALG00000003661
I
0.820
YBX1
Erinaceus europaeus
ENSEEUG00000005657
I
0.820
YBX3
Felis catus
ENSFCAG00000027748
I
0.820
Ybx2
Rattus norvegicus
ENSRNOG00000017117
I
0.803
YBX3
Procavia capensis
ENSPCAG00000001397
I
0.803
ENSPANG00000024250
Papio anubis
ENSPANG00000024250
I
0.803
ENSSHAG00000003262
Sarcophilus harrisii
ENSSHAG00000003262
I
0.803
ENSCAFG00000017286
Canis familiaris
ENSCAFG00000017286
I
0.803
ENSLOCG00000013819
Lepisosteus oculatus
ENSLOCG00000013819
I
0.803
ENSMMUG00000022712
Macaca mulatta
ENSMMUG00000022712
I
0.803
YBX2
Callithrix jacchus
ENSCJAG00000016581
I
0.803
YBX2
Procavia capensis
ENSPCAG00000008019
I
0.803
ENSCJAG00000010572
Callithrix jacchus
ENSCJAG00000010572
I
0.803
ENSPSIG00000012364
Pelodiscus sinensis
ENSPSIG00000012364
I
0.803
YBX2
Sus scrofa
ENSSSCG00000017938
I
0.803
LotgiG78612
Lottia gigantea
LotgiG78612
I
0.803
ENSAMEG00000016564
Ailuropoda melanoleuca
ENSAMEG00000016564
I
0.803
Ogr10632
Ophisaurus gracilis
Ogr10632
I
0.803
Alligator_sinensis_CCG005029.1
Alligator sinensis
Alligator_sinensis_CCG005029.1
I
0.803
ENSP00000007699-D1
Bos grunniens
ENSP00000007699-D1
I
0.803
YBX2
Bos taurus
ENSBTAG00000009126
I
0.803
YBX2
Felis catus
ENSFCAG00000018097
I
0.803
ENSSSCG00000030357
Sus scrofa
ENSSSCG00000030357
I
0.803
ENSCAFG00000016128
Canis familiaris
ENSCAFG00000016128
I
0.803
ENSSTOG00000008630
Ictidomys tridecemlineatus
ENSSTOG00000008630
I
0.803
Sakowv30002198m.g
Saccoglossus kowalevskii
Sakowv30002198m.g
I
0.803
YBX2
Tupaia belangeri
ENSTBEG00000001266
I
0.803
ybx2.S
Xenopus laevis
XB-GENE-6254213
I
0.803
ENSSHAG00000007786
Sarcophilus harrisii
ENSSHAG00000007786
I
0.803
ybx2
Xenopus tropicalis
XB-GENE-5798907
I
0.803
ENSCSAG00000011857
Chlorocebus sabaeus
ENSCSAG00000011857
I
0.803
ENSOARG00000011562
Ovis aries
ENSOARG00000011562
I
0.803
ENSECAG00000011356
Equus caballus
ENSECAG00000011356
I
0.803
ENSNLEG00000008063
Nomascus leucogenys
ENSNLEG00000008063
I
0.803
YBX2
Dasypus novemcinctus
ENSDNOG00000013746
I
0.803
ENSMMUG00000032563
Macaca mulatta
ENSMMUG00000032563
I
0.803
YBX2
Equus caballus
ENSECAG00000009996
I
0.803
YBX3
Monodelphis domestica
ENSMODG00000018248
I
0.803
ENSMPUG00000013922
Mustela putorius furo
ENSMPUG00000013922
I
0.803
YBX2
Otolemur garnettii
ENSOGAG00000004392
I
0.803
Ybx2
Mus musculus
ENSMUSG00000018554
I
0.803
YBX2
Ochotona princeps
ENSOPRG00000013773
I
0.803
YBX2
Cavia porcellus
ENSCPOG00000009543
I
0.803
ENSCJAG00000032211
Callithrix jacchus
ENSCJAG00000032211
I
0.803
ENSCJAG00000031891
Callithrix jacchus
ENSCJAG00000031891
I
0.797
Ocbimv22002282m.g
Octopus bimaculoides
Ocbimv22002282m.g
I
0.787
YBX2
Myotis lucifugus
ENSMLUG00000004686
I
0.787
YBX1
Tursiops truncatus
ENSTTRG00000001353
I
0.787
BGLB002206
Biomphalaria glabrata
BGLB002206
I
0.787
YBX2
Sorex araneus
ENSSARG00000000488
I
0.787
ENSPANG00000019627
Papio anubis
ENSPANG00000019627
I
0.787
ENSGMOG00000015216
Gadus morhua
ENSGMOG00000015216
I
0.787
YBX2
Oryctolagus cuniculus
ENSOCUG00000015064
I
0.787
YBX1
Pan troglodytes
ENSPTRG00000006456
I
0.787
ENSEEUG00000007494
Erinaceus europaeus
ENSEEUG00000007494
I
0.787
Afo_R006672
Aptenodytes forsteri
Afo_R006672
I
0.770
ENSP00000389639-D2
Bos grunniens
ENSP00000389639-D2
I
0.770
ACYPI003867
Acyrthosiphon pisum
ACYPI003867
I
0.770
ENSCAFG00000030502
Canis familiaris
ENSCAFG00000030502
I
0.770
Gfo_R009480
Geospiza fortis
Gfo_R009480
I
0.770
Tal_R011198
Tyto alba
Tal_R011198
I
0.770
YBX2
Gorilla gorilla
ENSGGOG00000007399
I
0.770
ENSCJAG00000031567
Callithrix jacchus
ENSCJAG00000031567
I
0.770
Ogr02658
Ophisaurus gracilis
Ogr02658
I
0.770
Brh_R010004
Buceros rhinoceros
Brh_R010004
I
0.770
ENSMODG00000022963
Monodelphis domestica
ENSMODG00000022963
I
0.770
ENSFCAG00000022604
Felis catus
ENSFCAG00000022604
I
0.770
ENSPANG00000005177
Papio anubis
ENSPANG00000005177
I
0.770
YQE_07192
Dendroctonus ponderosae
YQE_07192
I
0.770
YBX3
Myotis lucifugus
ENSMLUG00000007476
I
0.770
ENSSTOG00000002108
Ictidomys tridecemlineatus
ENSSTOG00000002108
I
0.770
LOC100912427
Rattus norvegicus
ENSRNOG00000032902
I
0.770
ENSSSCG00000028485
Sus scrofa
ENSSSCG00000028485
I
0.770
ENSCJAG00000035120
Callithrix jacchus
ENSCJAG00000035120
I
0.770
ENSCJAG00000033824
Callithrix jacchus
ENSCJAG00000033824
I
0.770
ENSSTOG00000000116
Ictidomys tridecemlineatus
ENSSTOG00000000116
I
0.770
ENSOCUG00000028047
Oryctolagus cuniculus
ENSOCUG00000028047
I
0.770
e_gw.440.24.1
Branchiostoma floridae
e_gw.440.24.1
I
0.770
ENSCSAG00000001168
Chlorocebus sabaeus
ENSCSAG00000001168
I
0.770
CapteG121832
Capitella teleta
CapteG121832
I
0.765
ENSCJAG00000035469
Callithrix jacchus
ENSCJAG00000035469
I
0.754
ENSMPUG00000010386
Mustela putorius furo
ENSMPUG00000010386
I
0.754
Myotis_brandtii_YBX2_10021025
Myotis brandtii
Myotis_brandtii_YBX2_10021025
I
0.754
PHUM156710
Pediculus humanus
PHUM156710
I
0.754
GB54355
Apis mellifera
GB54355
I
0.754
ENSCJAG00000007407
Callithrix jacchus
ENSCJAG00000007407
I
0.754
YBX2
Vicugna pacos
ENSVPAG00000003104
I
0.754
ENSCJAG00000018832
Callithrix jacchus
ENSCJAG00000018832
I
0.754
YBX2
Microcebus murinus
ENSMICG00000012453
I
0.754
CapteG166603
Capitella teleta
CapteG166603
I
0.754
ENSAMXG00000007090
Astyanax mexicanus
ENSAMXG00000007090
I
0.754
ENSMMUP00000017257
Macaca fascicularis
ENSMMUP00000017257
I
0.742
DAPPUDRAFT_311200
Daphnia pulex
DAPPUDRAFT_311200
I
0.738
LDEC002142
Leptinotarsa decemlineata
LDEC002142
I
0.738
Hsal_07052--XP_393344.3_APIME
Harpegnathos saltator
Hsal_07052--XP_393344.3_APIME
I
0.738
MDOA013639
Musca domestica
MDOA013639
I
0.738
GK16710
Drosophila willistoni
FBgn0218712
I
0.738
GF10852
Drosophila ananassae
FBgn0087892
I
0.738
LCUP004743
Lucilia cuprina
LCUP004743
I
0.738
SMU15014702
Schmidtea mediterranea
SMU15014702
I
0.738
ENSSSCG00000015308
Sus scrofa
ENSSSCG00000015308
I
0.738
GL15684
Drosophila persimilis
FBgn0153288
I
0.738
GA23502
Drosophila pseudoobscura
FBgn0244903
I
0.738
TC013925
Tribolium castaneum
TC013925
I
0.738
YBX2
Monodelphis domestica
ENSMODG00000017596
I
0.727
CGI_10014112
Crassostrea gigas
CGI_10014112
I
0.727
ybx3
Xenopus tropicalis
XB-GENE-1007558
I
0.727
YBX2
Homo sapiens
ENSG00000006047
I
0.727
YBX2
Pan troglodytes
ENSPTRG00000008673
I
0.727
ENSCAFG00000005162
Canis familiaris
ENSCAFG00000005162
I
0.724
ASIS019575
Anopheles sinensis
ASIS019575
I
0.721
ENSONIG00000018954
Oreochromis niloticus
ENSONIG00000018954
I
0.721
ENSAMEG00000018423
Ailuropoda melanoleuca
ENSAMEG00000018423
I
0.721
BGIBMGA000526
Bombyx mori
BGIBMGA000526
I
0.721
RPRC001993
Rhodnius prolixus
RPRC001993
I
0.721
ENSCSAVG00000003053
Ciona savignyi
ENSCSAVG00000003053
I
0.721
YBX2
Tetraodon nigroviridis
ENSTNIG00000010139
I
0.721
MCINX006244
Melitaea cinxia
MCINX006244
I
0.721
KGM_01291
Danaus plexippus
KGM_01291
I
0.721
ENSOGAG00000014939
Otolemur garnettii
ENSOGAG00000014939
I
0.721
HMEL008461
Heliconius melpomene
HMEL008461
I
0.721
ENSGGOG00000023581
Gorilla gorilla
ENSGGOG00000023581
I
0.712
AFAF015865
Anopheles farauti
AFAF015865
I
0.705
ADIR008587
Anopheles dirus
ADIR008587
I
0.705
ACUA007180
Anopheles culicifacies
ACUA007180
I
0.705
AEPI000589
Anopheles epiroticus
AEPI000589
I
0.705
AMEM010049
Anopheles merus
AMEM010049
I
0.705
ASTEI02878
Anopheles stephensi
ASTEI02878
I
0.705
AGAP006108
Anopheles gambiae
AGAP006108
I
0.705
ACEP12641
Atta cephalotes
ACEP12641
I
0.705
AQUA011660
Anopheles quadriannulatus
AQUA011660
I
0.705
AMIN009954
Anopheles minimus
AMIN009954
I
0.705
AMEC011905
Anopheles melas
AMEC011905
I
0.705
ACOM024661
Anopheles coluzzii
ACOM024661
I
0.705
AFUN005441
Anopheles funestus
AFUN005441
I
0.705
ENSCAFG00000016523
Canis familiaris
ENSCAFG00000016523
I
0.705
AAEL001375
Aedes aegypti
AAEL001375
I
0.705
ENSOGAG00000032929
Otolemur garnettii
ENSOGAG00000032929
I
0.705
ENSSTOG00000022212
Ictidomys tridecemlineatus
ENSSTOG00000022212
I
0.705
ENSSTOG00000026413
Ictidomys tridecemlineatus
ENSSTOG00000026413
I
0.705
ISCW005281
Ixodes scapularis
ISCW005281
I
0.705
ENSSTOG00000027979
Ictidomys tridecemlineatus
ENSSTOG00000027979
I
0.705
ENSOGAG00000032745
Otolemur garnettii
ENSOGAG00000032745
I
0.705
ENSOGAG00000030653
Otolemur garnettii
ENSOGAG00000030653
I
0.705
AALB005039
Anopheles albimanus
AALB005039
I
0.705
AARA007412
Anopheles arabiensis
AARA007412
I
0.705
ENSCAFG00000016520
Canis familiaris
ENSCAFG00000016520
I
0.705
ENSDNOG00000040947
Dasypus novemcinctus
ENSDNOG00000040947
I
0.705
ENSMPUG00000018977
Mustela putorius furo
ENSMPUG00000018977
I
0.705
ACHR003797
Anopheles christyi
ACHR003797
I
0.705