CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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YBX2
(
Pan troglodytes
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
ENSPTRG00000008673
T164763_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR
YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.970
0.970
YBX1
M10411_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.970
0.970
YBX1
M10412_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.970
0.970
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD
HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.970
0.970
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN
NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.803
0.803
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.758
0.758
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPTRP00000014791
CSD
95
164
VLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGP
Links
Other
CSD
family TFs
Other
Pan troglodytes
TFs
354 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TVAG_018710
Trichomonas vaginalis
TVAG_018710
N
0.000
TVAG_339550
Trichomonas vaginalis
TVAG_339550
N
0.000
TVAG_368830
Trichomonas vaginalis
TVAG_368830
N
0.000
TVAG_377390
Trichomonas vaginalis
TVAG_377390
N
0.000
TVAG_390680
Trichomonas vaginalis
TVAG_390680
N
0.000
TVAG_420680
Trichomonas vaginalis
TVAG_420680
N
0.000
TVAG_437560
Trichomonas vaginalis
TVAG_437560
N
0.000
TVAG_449400
Trichomonas vaginalis
TVAG_449400
N
0.000
TVAG_454720
Trichomonas vaginalis
TVAG_454720
N
0.000
TVAG_466180
Trichomonas vaginalis
TVAG_466180
N
0.000
TVAG_467150
Trichomonas vaginalis
TVAG_467150
N
0.000
TVAG_485780
Trichomonas vaginalis
TVAG_485780
N
0.000
TVAG_524830
Trichomonas vaginalis
TVAG_524830
N
0.000
TVAG_571170
Trichomonas vaginalis
TVAG_571170
N
0.000
TVAG_578010
Trichomonas vaginalis
TVAG_578010
N
0.000
TVAG_579390
Trichomonas vaginalis
TVAG_579390
N
0.000
TVAG_583970
Trichomonas vaginalis
TVAG_583970
N
0.000
TVAG_591630
Trichomonas vaginalis
TVAG_591630
N
0.000
TVAG_338810
Trichomonas vaginalis
TVAG_338810
N
0.000
TVAG_330350
Trichomonas vaginalis
TVAG_330350
N
0.000
TVAG_322890
Trichomonas vaginalis
TVAG_322890
N
0.000
TVAG_029370
Trichomonas vaginalis
TVAG_029370
N
0.000
TVAG_033780
Trichomonas vaginalis
TVAG_033780
N
0.000
TVAG_048400
Trichomonas vaginalis
TVAG_048400
N
0.000
TVAG_067570
Trichomonas vaginalis
TVAG_067570
N
0.000
TVAG_071510
Trichomonas vaginalis
TVAG_071510
N
0.000
TVAG_164660
Trichomonas vaginalis
TVAG_164660
N
0.000
TVAG_170740
Trichomonas vaginalis
TVAG_170740
N
0.000
TVAG_175940
Trichomonas vaginalis
TVAG_175940
N
0.000
TVAG_202360
Trichomonas vaginalis
TVAG_202360
N
0.000
TVAG_214740
Trichomonas vaginalis
TVAG_214740
N
0.000
TVAG_256400
Trichomonas vaginalis
TVAG_256400
N
0.000
TVAG_284820
Trichomonas vaginalis
TVAG_284820
N
0.000
TVAG_300100
Trichomonas vaginalis
TVAG_300100
N
0.000
TVAG_304870
Trichomonas vaginalis
TVAG_304870
N
0.000
TVAG_318500
Trichomonas vaginalis
TVAG_318500
N
0.000
TVAG_321990
Trichomonas vaginalis
TVAG_321990
N
0.000
TVAG_322240
Trichomonas vaginalis
TVAG_322240
N
0.000
TVAG_602440
Trichomonas vaginalis
TVAG_602440
N
0.000