Lin28b (Rattus norvegicus)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSRNOG00000025938 T164773_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.894 0.894
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSRNOP00000037788 CSD 28 100
ENSRNOP00000059027 CSD 28 100

Links

Other CSD family TFs
Other Rattus norvegicus TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lin28b Mus musculus ENSMUSG00000063804 I 1.000
LIN28B Bos taurus ENSBTAG00000043973 I 0.973
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.973
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.919
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.919
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.919
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.919
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.919
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.894
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.894
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.894
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.894
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.894
LIN28B Echinops telfairi ENSETEG00000015340 I 0.894
LIN28B Felis catus ENSFCAG00000005058 I 0.894
LIN28B Homo sapiens ENSG00000187772 D 0.894
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.894
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.894
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.894
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.894
LIN28B Sorex araneus ENSSARG00000008374 I 0.894
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.894
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.894
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.894
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.894
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.894
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.894
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.894
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.894
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.894
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.894
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.894
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.894
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.894
LIN28B Canis familiaris ENSCAFG00000003598 I 0.894
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.894
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.894
LIN28B Equus caballus ENSECAG00000020994 I 0.894
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.892
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.879
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.879
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.879
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.879
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.879
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.879
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.879
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.879
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.879
Aan_R007025 Calypte anna Aan_R007025 I 0.879
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.879
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.873
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.873
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.873
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.864
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.864
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.864
LIN28B Gallus gallus ENSGALG00000026761 I 0.848
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.848
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.833
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.818
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.818
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.818
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.818
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.818
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.818
Aan_R005866 Calypte anna Aan_R005866 I 0.818
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.818
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.818
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.818
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.818
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.818
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.818
LIN28A Sus scrofa ENSSSCG00000003557 I 0.818
LIN28A Canis familiaris ENSCAFG00000012488 I 0.818
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.818
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.818
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.818
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.818
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.818
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.818
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.818
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.818
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.818
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.818
Lin28a Mus musculus ENSMUSG00000050966 I 0.818
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.818
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.818
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.818
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.818
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.818
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.818
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.818
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.818
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.818
LIN28A Equus caballus ENSECAG00000020267 I 0.818
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.818
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.818
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.818
LIN28A Felis catus ENSFCAG00000012810 I 0.818
LIN28A Homo sapiens ENSG00000131914 I 0.818
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.818
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.818
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.803
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.803
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.803
Aan_R002277 Calypte anna Aan_R002277 I 0.803
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.803
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.803
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.803
yakG040859 Bos grunniens yakG040859 I 0.803
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.803
lin28a Xenopus tropicalis XB-GENE-491384 I 0.803
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.803
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.803
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.800
LIN28A Danio rerio ENSDARG00000004328 I 0.800
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.800
LIN28B Oryzias latipes ENSORLG00000012891 I 0.788
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.788
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.788
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.788
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.788
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.788
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.788
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.788
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.785
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.782
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.774
lin28b Danio rerio ENSDARG00000052511 I 0.773
lin28a.S Xenopus laevis XB-GENE-866059 I 0.773
lin28a Danio rerio ENSDARG00000016999 I 0.773
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.773
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.773
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.773
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.773
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.773
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.750
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.750
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.742
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.742
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.727
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.727
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.712
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.700