ENSSSCG00000022235 (Sus scrofa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSSCG00000022235 T164794_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.797 0.797
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.797 0.797
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.797 0.797
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.797 0.797
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000005878 CSD 43 110
ENSSSCP00000023742 CSD 55 122

Links

Other CSD family TFs
Other Sus scrofa TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSSSCG00000028681 Sus scrofa ENSSSCG00000028681 I 1.000
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.797
ybx1 Oryzias latipes ENSORLG00000004225 I 0.797
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.797
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.797
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.797
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.797
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.797
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.797
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.797
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.797
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.797
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.797
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.797
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.797
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.797
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.797
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.797
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.797
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.797
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.797
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.797
Ybx1 Mus musculus ENSMUSG00000028639 I 0.797
Ybx3 Mus musculus ENSMUSG00000030189 I 0.797
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.797
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.797
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.797
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.797
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.797
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.797
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.797
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.797
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.797
Aan_R014295 Calypte anna Aan_R014295 I 0.797
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.797
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.797
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.797
ybx1.S Xenopus laevis XB-GENE-865405 I 0.797
CAA42778 Xenopus laevis CAA42778 I 0.797
AAI30161 Xenopus laevis AAI30161 I 0.797
AAH42217 Xenopus laevis AAH42217 I 0.797
Aan_R001440 Calypte anna Aan_R001440 I 0.797
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.797
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.797
YBX3 Sus scrofa ENSSSCG00000000633 I 0.797
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.797
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.797
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.797
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.797
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.797
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.797
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.797
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.797
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.797
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.797
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.797
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.797
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.797
YBX1 Gallus gallus ENSGALG00000004848 I 0.797
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.797
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.797
YBX1 Bos taurus ENSBTAG00000017368 I 0.797
YBX3 Echinops telfairi ENSETEG00000002557 I 0.797
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.797
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.797
YBX1 Canis familiaris ENSCAFG00000002541 I 0.797
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.797
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.797
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.797
YBX3 Equus caballus ENSECAG00000013777 I 0.797
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.797
YBX3 Canis familiaris ENSCAFG00000013401 I 0.797
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.797
YBX1 Homo sapiens ENSG00000065978 D 0.797
ybx1 Danio rerio ENSDARG00000004757 I 0.797
YBX3 Homo sapiens ENSG00000060138 I 0.797
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.797
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.797
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.797
YBX3 Bos taurus ENSBTAG00000009663 I 0.797
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.797
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.797
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.797
YBX3 Felis catus ENSFCAG00000027748 I 0.797
YBX3 Procavia capensis ENSPCAG00000001397 I 0.785
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 0.784
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.781
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.781
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.781
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.781
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.781
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.781
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.781
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.781
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.776
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.776
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.771
Tal_R011198 Tyto alba Tal_R011198 I 0.771
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.771
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.771
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.771
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.771
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.769
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.766
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.766
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.766
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.766
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.766
YBX2 Sorex araneus ENSSARG00000000488 I 0.766
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.766
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.760
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.758
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.758
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.758
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.758
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.758
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.758
YBX2 Sus scrofa ENSSSCG00000017938 I 0.758
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.758
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.758
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.758
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.758
YBX2 Bos taurus ENSBTAG00000009126 I 0.758
YBX2 Equus caballus ENSECAG00000009996 I 0.758
Ybx2 Mus musculus ENSMUSG00000018554 I 0.758
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.758
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.758
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.758
YBX2 Felis catus ENSFCAG00000018097 I 0.758
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.758
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.758
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.758
YBX2 Procavia capensis ENSPCAG00000008019 I 0.758
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.758
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.758
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.758
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.758
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.758
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.750
Cmyd_10002115 Chelonia mydas Cmyd_10002115 I 0.750
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.750
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.750
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.750
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.746
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.746
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.742
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.742
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.742
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.742
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.742
YBX2 Homo sapiens ENSG00000006047 I 0.742
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.742
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.742
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.742
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.742
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.735
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.735
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.734
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.734
Tal_R003478 Tyto alba Tal_R003478 I 0.730
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.730
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.729
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.727
ENSSSCG00000008860 Sus scrofa ENSSSCG00000008860 I 0.727
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.727
ENSAMEG00000018423 Ailuropoda melanoleuca ENSAMEG00000018423 I 0.719
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.719
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.719
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.719
LotgiG78612 Lottia gigantea LotgiG78612 I 0.719
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.719
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.718
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.718
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.714
ENSGMOG00000007765 Gadus morhua ENSGMOG00000007765 I 0.712
YBX2 Gasterosteus aculeatus ENSGACG00000019392 I 0.712
ENSXMAG00000015755 Xiphophorus maculatus ENSXMAG00000015755 I 0.712
ENSORLG00000006269 Oryzias latipes ENSORLG00000006269 I 0.712
ENSPFOG00000007181 Poecilia formosa ENSPFOG00000007181 I 0.712
ENSSSCG00000015308 Sus scrofa ENSSSCG00000015308 I 0.712
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I 0.712
Pvit_07856 Pogona vitticeps Pvit_07856 I 0.712
ENSMPUG00000011810 Mustela putorius furo ENSMPUG00000011810 I 0.706
ENSFALG00000010305 Ficedula albicollis ENSFALG00000010305 I 0.704
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.703
CapteG166603 Capitella teleta CapteG166603 I 0.703