ENSSSCG00000028485 (Sus scrofa)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSSSCG00000028485 T164795_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.790 0.790
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.790 0.790
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.790 0.790
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.790 0.790
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSSSCP00000022947 CSD 63 128

Links

Other CSD family TFs
Other Sus scrofa TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
YBX3 Tursiops truncatus ENSTTRG00000008045 I 1.000
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 1.000
ENSMEUG00000009893 Macropus eugenii ENSMEUG00000009893 I 1.000
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.979
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.979
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.979
Tal_R011198 Tyto alba Tal_R011198 I 0.979
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.979
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.979
Tal_R003478 Tyto alba Tal_R003478 I 0.973
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.959
YBX1 Homo sapiens ENSG00000065978 D 0.959
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.959
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.959
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.959
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.958
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.952
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.949
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.949
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.940
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.940
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.922
Pvit_07856 Pogona vitticeps Pvit_07856 I 0.904
ENSMLUG00000024638 Myotis lucifugus ENSMLUG00000024638 I 0.902
ENSFALG00000010305 Ficedula albicollis ENSFALG00000010305 I 0.889
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.882
SINV21160 Solenopsis invicta SINV21160 I 0.872
ENSMPUG00000011810 Mustela putorius furo ENSMPUG00000011810 I 0.843
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.837
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.806
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.790
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.790
CAA42778 Xenopus laevis CAA42778 I 0.790
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.790
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.790
AAI30161 Xenopus laevis AAI30161 I 0.790
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.790
ybx1 Oryzias latipes ENSORLG00000004225 I 0.790
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.790
ybx1.S Xenopus laevis XB-GENE-865405 I 0.790
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.790
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.790
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.790
Ybx1 Mus musculus ENSMUSG00000028639 I 0.790
Ybx3 Mus musculus ENSMUSG00000030189 I 0.790
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.790
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.790
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.790
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.790
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.790
YBX1 Tursiops truncatus ENSTTRG00000001353 I 0.790
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.790
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.790
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.790
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.790
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.790
Aan_R001440 Calypte anna Aan_R001440 I 0.790
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.790
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.790
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.790
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.790
Aan_R014295 Calypte anna Aan_R014295 I 0.790
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.790
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.790
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.790
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.790
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.790
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.790
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.790
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.790
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.790
YBX3 Sus scrofa ENSSSCG00000000633 I 0.790
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.790
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.790
AAH42217 Xenopus laevis AAH42217 I 0.790
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.790
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.790
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.790
YBX1 Gallus gallus ENSGALG00000004848 I 0.790
ybx1 Danio rerio ENSDARG00000004757 I 0.790
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.790
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.790
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.790
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.790
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.790
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.790
YBX3 Homo sapiens ENSG00000060138 I 0.790
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.790
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.790
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.790
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.790
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.790
YBX3 Felis catus ENSFCAG00000027748 I 0.790
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.790
YBX3 Equus caballus ENSECAG00000013777 I 0.790
YBX3 Echinops telfairi ENSETEG00000002557 I 0.790
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.790
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.790
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.790
YBX3 Bos taurus ENSBTAG00000009663 I 0.790
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.790
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.790
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.790
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.790
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.790
YBX1 Bos taurus ENSBTAG00000017368 I 0.790
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.790
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.790
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.790
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.790
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.790
YBX1 Canis familiaris ENSCAFG00000002541 I 0.790
YBX3 Canis familiaris ENSCAFG00000013401 I 0.790
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.790
ENSCJAG00000031891 Callithrix jacchus ENSCJAG00000031891 I 0.780
ENSSHAG00000007786 Sarcophilus harrisii ENSSHAG00000007786 I 0.780
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.774
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.774
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.774
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.774
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.774
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.774
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.774
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.774
YBX3 Oryctolagus cuniculus ENSOCUG00000001889 I 0.770
CapteG121832 Capitella teleta CapteG121832 I 0.765
YBX2 Sorex araneus ENSSARG00000000488 I 0.758
YBX2 Myotis lucifugus ENSMLUG00000004686 I 0.758
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I 0.758
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.758
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.758
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.758
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 0.758
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.758
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I 0.758
YBX2 Oryctolagus cuniculus ENSOCUG00000015064 I 0.742
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.742
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.742
LotgiG78612 Lottia gigantea LotgiG78612 I 0.742
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.742
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.742
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.742
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.742
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.742
YBX2 Microcebus murinus ENSMICG00000012453 I 0.742
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.742
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.742
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.742
YBX3 Procavia capensis ENSPCAG00000001397 I 0.738
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.738
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.727
ENSMMUP00000017257 Macaca fascicularis ENSMMUP00000017257 I 0.727
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.727
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.727
Ybx2 Mus musculus ENSMUSG00000018554 I 0.727
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.727
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.727
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.727
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.727
YBX2 Bos taurus ENSBTAG00000009126 I 0.727
ENSCJAG00000032211 Callithrix jacchus ENSCJAG00000032211 I 0.727
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.727
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.727
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.727
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.727
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.727
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.727
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.727
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.727
YBX2 Felis catus ENSFCAG00000018097 I 0.727
YBX2 Equus caballus ENSECAG00000009996 I 0.727
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.727
YBX2 Sus scrofa ENSSSCG00000017938 I 0.727
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.727
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.727
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.727
YBX2 Procavia capensis ENSPCAG00000008019 I 0.727
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.727
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.727
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.726
ENSCJAG00000007407 Callithrix jacchus ENSCJAG00000007407 I 0.726
ENSCAFG00000005162 Canis familiaris ENSCAFG00000005162 I 0.724
ENSCAFG00000030502 Canis familiaris ENSCAFG00000030502 I 0.712
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.712
YBX2 Pan troglodytes ENSPTRG00000008673 I 0.712
ybx3 Xenopus tropicalis XB-GENE-1007558 I 0.712
YBX2 Monodelphis domestica ENSMODG00000017596 I 0.712
YBX2 Homo sapiens ENSG00000006047 I 0.712
CapteG166603 Capitella teleta CapteG166603 I 0.710
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.710