lin28a (Tetraodon nigroviridis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTNIG00000009802 T164815_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.758 0.758
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.758 0.758
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000012690 CSD 28 100

Links

Other CSD family TFs
Other Tetraodon nigroviridis TFs

139 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.879
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.838
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.838
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.838
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.838
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.838
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.833
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.833
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.811
lin28a Danio rerio ENSDARG00000016999 I 0.807
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.803
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.803
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.788
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.788
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.788
lin28b Danio rerio ENSDARG00000052511 I 0.788
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.788
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.788
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.788
Aan_R005866 Calypte anna Aan_R005866 I 0.788
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.788
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.788
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.788
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.788
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.788
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.788
LIN28A Danio rerio ENSDARG00000004328 I 0.785
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.785
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.785
LIN28B Bos taurus ENSBTAG00000043973 I 0.784
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.784
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.773
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.773
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.773
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.773
lin28a.S Xenopus laevis XB-GENE-866059 I 0.773
lin28a Xenopus tropicalis XB-GENE-491384 I 0.773
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.773
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.773
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.773
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.773
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.773
Aan_R007025 Calypte anna Aan_R007025 I 0.773
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.773
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.773
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.773
LIN28B Oryzias latipes ENSORLG00000012891 I 0.773
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.773
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.773
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.764
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.764
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.764
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.764
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.758
LIN28B Canis familiaris ENSCAFG00000003598 I 0.758
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.758
LIN28A Sus scrofa ENSSSCG00000003557 I 0.758
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.758
LIN28B Sorex araneus ENSSARG00000008374 I 0.758
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.758
LIN28A Equus caballus ENSECAG00000020267 I 0.758
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.758
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.758
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.758
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.758
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.758
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.758
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.758
LIN28B Homo sapiens ENSG00000187772 D 0.758
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.758
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.758
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.758
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.758
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.758
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.758
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.758
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.758
LIN28B Felis catus ENSFCAG00000005058 I 0.758
LIN28A Felis catus ENSFCAG00000012810 I 0.758
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.758
LIN28A Homo sapiens ENSG00000131914 I 0.758
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.758
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.758
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.758
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.758
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.758
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.758
LIN28A Canis familiaris ENSCAFG00000012488 I 0.758
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.758
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.758
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.758
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.758
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.758
yakG040859 Bos grunniens yakG040859 I 0.758
Lin28a Mus musculus ENSMUSG00000050966 I 0.758
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.758
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.758
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.758
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.758
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.758
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.758
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.758
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.758
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.758
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.758
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.758
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.758
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.758
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.758
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.758
LIN28B Equus caballus ENSECAG00000020994 I 0.758
LIN28B Gallus gallus ENSGALG00000026761 I 0.758
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.758
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.758
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.758
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.758
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.758
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.758
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.758
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.758
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.758
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.758
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.758
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.758
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.758
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.742
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.742
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.742
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.742
LIN28B Echinops telfairi ENSETEG00000015340 I 0.742
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.742
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.742
Lin28b Mus musculus ENSMUSG00000063804 I 0.727
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.727
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.727
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.727
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I 0.710
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.708
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I 0.700