ATGRP2B (Arabidopsis lyrata)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 fgenesh2_kg.4__14__AT2G21060.1 T164910_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CSP4
M01902_2.00
Arabidopsis thaliana
AAWAAAAM

KTTTTWTT
PBM
Weirauch et al.(2014)
pTH7494
0.924 0.924
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.4__14__AT2G21060.1 CSD 14 80

Links

Other CSD family TFs
Other Arabidopsis lyrata TFs

25 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CSP4 Arabidopsis thaliana AT2G21060 D 0.924
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.909
mgf015980m Mimulus guttatus mgf015980m I 0.712
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.758
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.758
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.712
Pm020837 Prunus mume Pm020837 I 0.727
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.742
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.758
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.879
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.742
CSP2 Arabidopsis thaliana AT4G38680 I 0.894
Bo3g141510 Brassica oleracea Bo3g141510 I 0.848
Bo4g145670 Brassica oleracea Bo4g145670 I 0.864
Bo7g049880 Brassica oleracea Bo7g049880 I 0.773
Bo8g102040 Brassica oleracea Bo8g102040 I 0.894
Bra030325 Brassica rapa Bra030325 I 0.894
Bra031159 Brassica rapa Bra031159 I 0.894
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.970
MDP0000155077 Malus domestica MDP0000155077 N 0.712
mgf014458m Mimulus guttatus mgf014458m N 0.727
mgf001526m Mimulus guttatus mgf001526m N 0.727
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.712
Ca_11038 Cicer arietinum Ca_11038 N 0.712
MDP0000202739 Malus domestica MDP0000202739 N 0.712