Cmyd_10000339 (Chelonia mydas)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cmyd_10000339 T165298_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.946 0.946
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.946 0.946
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.946 0.946
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.946 0.946
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.757 0.757
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.703 0.703
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10000339 CSD 23 63

Links

Other CSD family TFs
Other Chelonia mydas TFs

191 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSMPUG00000010386 Mustela putorius furo ENSMPUG00000010386 I 0.973
Cmyd_10002115 Chelonia mydas Cmyd_10002115 I 0.972
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.946
ybx1 Oryzias latipes ENSORLG00000004225 I 0.946
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.946
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.946
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.946
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.946
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.946
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.946
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.946
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.946
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.946
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.946
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.946
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.946
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.946
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.946
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.946
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.946
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.946
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.946
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.946
Ybx3 Mus musculus ENSMUSG00000030189 I 0.946
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.946
Ybx1 Mus musculus ENSMUSG00000028639 I 0.946
ENSMPUG00000013922 Mustela putorius furo ENSMPUG00000013922 I 0.946
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.946
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.946
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.946
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.946
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.946
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.946
Cmyd_10003103 Chelonia mydas Cmyd_10003103 I 0.946
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.946
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.946
Tal_R003478 Tyto alba Tal_R003478 I 0.946
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.946
ybx1.S Xenopus laevis XB-GENE-865405 I 0.946
CAA42778 Xenopus laevis CAA42778 I 0.946
AAI30161 Xenopus laevis AAI30161 I 0.946
AAH42217 Xenopus laevis AAH42217 I 0.946
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.946
Aan_R014295 Calypte anna Aan_R014295 I 0.946
YBX3 Sus scrofa ENSSSCG00000000633 I 0.946
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.946
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.946
YBX2 Sorex araneus ENSSARG00000000488 I 0.946
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.946
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.946
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.946
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.946
Aan_R001440 Calypte anna Aan_R001440 I 0.946
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.946
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.946
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.946
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.946
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.946
ybx1 Danio rerio ENSDARG00000004757 I 0.946
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.946
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.946
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.946
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.946
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.946
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.946
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.946
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.946
YBX3 Equus caballus ENSECAG00000013777 I 0.946
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.946
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.946
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.946
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.946
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.946
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.946
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.946
YBX3 Bos taurus ENSBTAG00000009663 I 0.946
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.946
YBX1 Canis familiaris ENSCAFG00000002541 I 0.946
YBX1 Bos taurus ENSBTAG00000017368 I 0.946
YBX3 Echinops telfairi ENSETEG00000002557 I 0.946
YBX3 Canis familiaris ENSCAFG00000013401 I 0.946
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.946
YBX3 Felis catus ENSFCAG00000027748 I 0.946
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.946
YBX1 Gallus gallus ENSGALG00000004848 I 0.946
YBX1 Homo sapiens ENSG00000065978 D 0.946
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.946
YBX3 Homo sapiens ENSG00000060138 I 0.946
YBX2 Gorilla gorilla ENSGGOG00000007399 I 0.946
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.946
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.946
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.919
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.919
Alligator_sinensis_CCG014301.1 Alligator sinensis Alligator_sinensis_CCG014301.1 I 0.897
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.892
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.892
ENSCJAG00000033824 Callithrix jacchus ENSCJAG00000033824 I 0.892
ENSMLUG00000029452 Myotis lucifugus ENSMLUG00000029452 I 0.875
ENSOCUG00000024588 Oryctolagus cuniculus ENSOCUG00000024588 I 0.875
ENSOGAG00000014939 Otolemur garnettii ENSOGAG00000014939 I 0.865
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.865
CapteG166603 Capitella teleta CapteG166603 I 0.865
ENSGGOG00000023840 Gorilla gorilla ENSGGOG00000023840 I 0.857
ENSOCUG00000000147 Oryctolagus cuniculus ENSOCUG00000000147 I 0.853
ENSSTOG00000022212 Ictidomys tridecemlineatus ENSSTOG00000022212 I 0.838
ENSSTOG00000026413 Ictidomys tridecemlineatus ENSSTOG00000026413 I 0.838
ENSSTOG00000027979 Ictidomys tridecemlineatus ENSSTOG00000027979 I 0.838
ENSCAFG00000016520 Canis familiaris ENSCAFG00000016520 I 0.838
ENSCAFG00000016523 Canis familiaris ENSCAFG00000016523 I 0.838
ACYPI003867 Acyrthosiphon pisum ACYPI003867 I 0.838
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.838
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.838
ENSMPUG00000018977 Mustela putorius furo ENSMPUG00000018977 I 0.838
ENSOCUG00000021258 Oryctolagus cuniculus ENSOCUG00000021258 I 0.829
ENSOCUG00000026608 Oryctolagus cuniculus ENSOCUG00000026608 I 0.825
YBX1 Loxodonta africana ENSLAFG00000031170 I 0.821
AEPI000589 Anopheles epiroticus AEPI000589 I 0.811
ACUA007180 Anopheles culicifacies ACUA007180 I 0.811
CPIJ002248 Culex quinquefasciatus CPIJ002248 I 0.811
HHAL001434-PA Halyomorpha halys HHAL001434-PA I 0.811
ACOM024661 Anopheles coluzzii ACOM024661 I 0.811
AGAP006108 Anopheles gambiae AGAP006108 I 0.811
AARA007412 Anopheles arabiensis AARA007412 I 0.811
ACHR003797 Anopheles christyi ACHR003797 I 0.811
AFUN005441 Anopheles funestus AFUN005441 I 0.811
AMEC011905 Anopheles melas AMEC011905 I 0.811
ENSOGAG00000030653 Otolemur garnettii ENSOGAG00000030653 I 0.811
ASTEI02878 Anopheles stephensi ASTEI02878 I 0.811
CpipJ_CPIJ002248 Culex pipiens CpipJ_CPIJ002248 I 0.811
AMIN009954 Anopheles minimus AMIN009954 I 0.811
AQUA011660 Anopheles quadriannulatus AQUA011660 I 0.811
AMEM010049 Anopheles merus AMEM010049 I 0.811
ENSMLUG00000024638 Myotis lucifugus ENSMLUG00000024638 I 0.805
ENSSHAG00000011350 Sarcophilus harrisii ENSSHAG00000011350 I 0.786
nAv.1.0.1.g07732 Acanthocheilonema viteae nAv.1.0.1.g07732 I 0.784
RPRC001993 Rhodnius prolixus RPRC001993 I 0.784
EEL_0000726801 Elaeophora elaphi EEL_0000726801 I 0.784
Bm3781 Brugia malayi Bm3781 I 0.784
LOAG_17966 Loa loa LOAG_17966 I 0.784
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.784
nOo.2.0.1.g01690 Onchocerca ochengi nOo.2.0.1.g01690 I 0.784
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.784
ENSOGAG00000030360 Otolemur garnettii ENSOGAG00000030360 I 0.784
WUBG_03960 Wuchereria bancrofti WUBG_03960 I 0.784
CapteG48958 Capitella teleta CapteG48958 I 0.784
GPUH_0001124501 Gongylonema pulchrum GPUH_0001124501 I 0.784
ENSSARG00000012628 Sorex araneus ENSSARG00000012628 I 0.784
nDi.2.2.2.g07679 Dirofilaria immitis nDi.2.2.2.g07679 I 0.784
nLs.2.1.2.g03745 Litomosoides sigmodontis nLs.2.1.2.g03745 I 0.784
WBGene00247949 Onchocerca volvulus WBGene00247949 I 0.784
ENSGGOG00000023581 Gorilla gorilla ENSGGOG00000023581 I 0.767
YBX2 Microcebus murinus ENSMICG00000012453 I 0.766
YBX2 Vicugna pacos ENSVPAG00000003104 I 0.766
CapteG121832 Capitella teleta CapteG121832 I 0.765
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.757
ENSOGAG00000031268 Otolemur garnettii ENSOGAG00000031268 I 0.757
CapteG58124 Capitella teleta CapteG58124 I 0.757
ENSOCUG00000022716 Oryctolagus cuniculus ENSOCUG00000022716 I 0.756
Myotis_brandtii_YBX2_10021025 Myotis brandtii Myotis_brandtii_YBX2_10021025 I 0.750
YBX3 Tursiops truncatus ENSTTRG00000008045 I 0.745
T265_06248 Opisthorchis viverrini T265_06248 I 0.730
ENSORLG00000018683 Oryzias latipes ENSORLG00000018683 I 0.730
ENSOCUG00000028047 Oryctolagus cuniculus ENSOCUG00000028047 I 0.729
ENSSTOG00000000116 Ictidomys tridecemlineatus ENSSTOG00000000116 I 0.729
Afo_R006672 Aptenodytes forsteri Afo_R006672 I 0.729
ENSFCAG00000022604 Felis catus ENSFCAG00000022604 I 0.729
Gfo_R009480 Geospiza fortis Gfo_R009480 I 0.729
Brh_R010004 Buceros rhinoceros Brh_R010004 I 0.729
Tal_R011198 Tyto alba Tal_R011198 I 0.729
ENSSTOG00000002108 Ictidomys tridecemlineatus ENSSTOG00000002108 I 0.714
ENSGGOG00000004758 Gorilla gorilla ENSGGOG00000004758 I 0.714
YBX3 Myotis lucifugus ENSMLUG00000007476 I 0.714
ENSP00000389639-D2 Bos grunniens ENSP00000389639-D2 I 0.714
Ogr02658 Ophisaurus gracilis Ogr02658 I 0.714
ENSCSAG00000001168 Chlorocebus sabaeus ENSCSAG00000001168 I 0.714
Myotis_brandtii_YBX1_10016780 Myotis brandtii Myotis_brandtii_YBX1_10016780 I 0.708
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.706
cey-1 Caenorhabditis elegans WBGene00000472 D 0.703
NBR_0000795701 Nippostrongylus brasiliensis NBR_0000795701 I 0.703
ENSOARG00000004633 Ovis aries ENSOARG00000004633 I 0.703
Minc12652 Meloidogyne incognita Minc12652 I 0.703
TELCIR_06115 Teladorsagia circumcincta TELCIR_06115 I 0.703
ENSAMEG00000008685 Ailuropoda melanoleuca ENSAMEG00000008685 I 0.703
ENSBTAG00000045616 Bos taurus ENSBTAG00000045616 I 0.703
MhA1_Contig2458.frz3.gene1 Meloidogyne hapla MhA1_Contig2458.frz3.gene1 I 0.703
ACAC_0000909201 Angiostrongylus cantonensis ACAC_0000909201 I 0.703
genemark-nMf.1.1.scaf00296-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf00296-processed-gene-0.4 I 0.703
ACOC_0000576201 Angiostrongylus costaricensis ACOC_0000576201 I 0.703
HPBE_0000695301 Heligmosomoides bakeri HPBE_0000695301 I 0.703
DICVIV_10680 Dictyocaulus viviparus DICVIV_10680 I 0.703
YBX3 Pan troglodytes ENSPTRG00000004681 I 0.700