yakA12818 (Bos grunniens)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 yakA12818 T165341_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG

CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.865 0.865
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG

CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.865 0.865
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
yakA12818 CSD 38 74

Links

Other CSD family TFs
Other Bos grunniens TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lin28a Mus musculus ENSMUSG00000050966 I 0.969
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.946
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.946
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.946
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.946
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.946
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.946
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.946
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.946
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.946
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.946
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.946
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.946
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.946
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.946
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.946
LIN28A Sus scrofa ENSSSCG00000003557 I 0.946
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.946
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.946
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.946
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.946
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.946
LIN28A Equus caballus ENSECAG00000020267 I 0.946
LIN28A Felis catus ENSFCAG00000012810 I 0.946
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.946
LIN28A Canis familiaris ENSCAFG00000012488 I 0.946
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.946
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.946
LIN28A Homo sapiens ENSG00000131914 I 0.946
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.946
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.946
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.946
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.946
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.946
Afo_R008930 Aptenodytes forsteri Afo_R008930 I 0.919
Brh_R006709 Buceros rhinoceros Brh_R006709 I 0.919
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I 0.919
Ogr09706 Ophisaurus gracilis Ogr09706 I 0.919
Gfo_R011576 Geospiza fortis Gfo_R011576 I 0.919
Tal_R007754 Tyto alba Tal_R007754 I 0.919
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I 0.919
ENSPSIG00000018001 Pelodiscus sinensis ENSPSIG00000018001 I 0.919
Ogr14286 Ophisaurus gracilis Ogr14286 I 0.906
ENSMMUG00000032211 Macaca mulatta ENSMMUG00000032211 I 0.897
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.892
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.865
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.865
ENSSHAG00000012716 Sarcophilus harrisii ENSSHAG00000012716 I 0.865
LIN28B Bos taurus ENSBTAG00000043973 I 0.865
LIN28B Myotis lucifugus ENSMLUG00000006883 I 0.865
Cmyd_10021069 Chelonia mydas Cmyd_10021069 I 0.865
LIN28B Meleagris gallopavo ENSMGAG00000013531 I 0.838
LIN28B Gallus gallus ENSGALG00000026761 I 0.838
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.811