CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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yakA12818
(
Bos grunniens
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00313 (CSD)
IPR002059
yakA12818
T165341_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LIN28B
M04663_2.00
Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX
0.865
0.865
LIN28B
M04664_2.00
Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG
SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX
0.865
0.865
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
yakA12818
CSD
38
74
SSKLHMEGFGSLKEGEAVEFTFKKSAKGLESIRVTGP
Links
Other
CSD
family TFs
Other
Bos grunniens
TFs
54 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy