Ocbimv22002282m.g (Octopus bimaculoides)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Ocbimv22002282m.g T165410_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.894 0.894
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.894 0.894
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.894 0.894
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.894 0.894
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN

NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.818 0.818
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD

HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.788 0.788
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22002282m.p CSD 30 99

Links

Other CSD family TFs
Other Octopus bimaculoides TFs

363 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G350312 Zea mays GRMZM2G350312 N 0.000
Si037016m.g Setaria italica Si037016m.g N 0.000
Pavir.Ia03149 Panicum virgatum Pavir.Ia03149 N 0.000
Pavir.J37675 Panicum virgatum Pavir.J37675 N 0.000
PDK_20s1339251g001 Phoenix dactylifera PDK_20s1339251g001 N 0.000