Sakowv30002198m.g (Saccoglossus kowalevskii)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Sakowv30002198m.g T165415_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.864 0.864
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.864 0.864
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.864 0.864
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.864 0.864
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.818 0.818
cey-1
M01903_2.00 		Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN		 PBM
Weirauch et al.(2014)
pTH8991 		0.803 0.803
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
23933241_peptide CSD 69 138
23933242_peptide CSD 13 82
23933243_peptide CSD 5 74
23933244_peptide CSD 69 132
23933245_peptide CSD 9 60
23933246_peptide CSD 69 113

Links

Other CSD family TFs
Other Saccoglossus kowalevskii TFs

Invalid Input OrderBy

416 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action