Cagra.2961s0009 (Capsella grandiflora)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Cagra.2961s0009 T165427_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CSP4
M01902_2.00
Arabidopsis thaliana
AAWAAAAM

KTTTTWTT
PBM
Weirauch et al.(2014)
pTH7494
0.909 0.909
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.2961s0009.1.p CSD 14 80

Links

Other CSD family TFs
Other Capsella grandiflora TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
CSP4 Arabidopsis thaliana AT2G21060 D 0.909
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.742
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.758
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.712
Pm020837 Prunus mume Pm020837 I 0.712
mgf015980m Mimulus guttatus mgf015980m I 0.727
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.939
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.773
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.773
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.909
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.758
Bo7g049880 Brassica oleracea Bo7g049880 I 0.773
Bo3g141510 Brassica oleracea Bo3g141510 I 0.848
CSP2 Arabidopsis thaliana AT4G38680 I 0.894
Bo8g102040 Brassica oleracea Bo8g102040 I 0.894
Bra030325 Brassica rapa Bra030325 I 0.894
Bra031159 Brassica rapa Bra031159 I 0.894
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.970
Bo4g145670 Brassica oleracea Bo4g145670 I 0.864
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.712
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.707
mgf014458m Mimulus guttatus mgf014458m N 0.742
mgf001526m Mimulus guttatus mgf001526m N 0.742
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.727
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.712
Ca_11038 Cicer arietinum Ca_11038 N 0.727