Gorai.002G195100 (Gossypium raimondii)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Gorai.002G195100 T165453_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CSP4
M01902_2.00 		Arabidopsis thaliana
AAWAAAAM
KTTTTWTT		 PBM
Weirauch et al.(2014)
pTH7494 		0.742 0.742
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.002G195100.1 CSD 6 71
Gorai.002G195100.2 CSD 6 71

Links

Other CSD family TFs
Other Gossypium raimondii TFs

51 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 1.000
Gorai.005G253200 Gossypium raimondii Gorai.005G253200 I 0.803
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.803
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.788
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.773
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.773
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.773
mgf014458m Mimulus guttatus mgf014458m N 0.758
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.758
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.758
mgf001526m Mimulus guttatus mgf001526m N 0.758
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.758
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.758
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.758
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.758
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.758
Cla016088 Citrullus lanatus Cla016088 N 0.758
MDP0000202739 Malus domestica MDP0000202739 N 0.742
CSP4 Arabidopsis thaliana AT2G21060 D 0.742
MDP0000155077 Malus domestica MDP0000155077 N 0.742
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.742
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.742
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.742
Pm020837 Prunus mume Pm020837 I 0.742
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.742
Bo3g141510 Brassica oleracea Bo3g141510 I 0.742
Bra031159 Brassica rapa Bra031159 I 0.742
Bo8g102040 Brassica oleracea Bo8g102040 I 0.742
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.742
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.741
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.727
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.727
MDP0000225222 Malus domestica MDP0000225222 N 0.727
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.727
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.727
Ca_11038 Cicer arietinum Ca_11038 N 0.727
CSP2 Arabidopsis thaliana AT4G38680 I 0.727
chr3.CM0112.180.nd Lotus japonicus chr3.CM0112.180.nd N 0.727
GRP2 Arabidopsis lyrata scaffold_700059.1 I 0.727
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.727
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.712
Bo4g145670 Brassica oleracea Bo4g145670 I 0.712
Thhalv10022795m.g Eutrema salsugineum Thhalv10022795m.g N 0.712
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.712
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.712
Phatr3_J15211 Phaeodactylum tricornutum Phatr3_J15211 N 0.712
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.712
Bra030325 Brassica rapa Bra030325 I 0.712
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.712
IGS.gm_9_00317 Chlorella NC64A IGS.gm_9_00317 N 0.705