Gorai.005G253200 (Gossypium raimondii)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 Gorai.005G253200 T165454_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CSP4
M01902_2.00
Arabidopsis thaliana
AAWAAAAM

KTTTTWTT
PBM
Weirauch et al.(2014)
pTH7494
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.005G253200.1 CSD 6 71

Links

Other CSD family TFs
Other Gossypium raimondii TFs

67 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Pm020837 Prunus mume Pm020837 I 0.833
VIT_03s0038g02130 Vitis vinifera VIT_03s0038g02130 I 0.818
PK26692.1 Cannabis sativa PK26692.1 I 0.809
cassava29163.valid.m1 Manihot esculenta cassava29163.valid.m1 N 0.803
Gorai.002G195000 Gossypium raimondii Gorai.002G195000 I 0.803
Gorai.002G195100 Gossypium raimondii Gorai.002G195100 I 0.803
PK03316.1 Cannabis sativa PK03316.1 N 0.788
MDP0000225222 Malus domestica MDP0000225222 N 0.788
GLYMA12G03470 Glycine max GLYMA12G03470 N 0.788
Solyc01g111300.2 Solanum lycopersicum Solyc01g111300.2 N 0.773
PGSC0003DMG400023206 Solanum tuberosum PGSC0003DMG400023206 I 0.773
Ca_11038 Cicer arietinum Ca_11038 N 0.773
Cla016088 Citrullus lanatus Cla016088 N 0.773
Cucsa.381750 Cucumis sativus Cucsa.381750 N 0.773
gene07618-v1.0-hybrid Fragaria vesca gene07618-v1.0-hybrid N 0.773
MDP0000155077 Malus domestica MDP0000155077 N 0.773
MDP0000202739 Malus domestica MDP0000202739 N 0.773
PGSC0003DMG400001590 Solanum tuberosum PGSC0003DMG400001590 N 0.773
SapurV1A.0117s0150 Salix purpurea SapurV1A.0117s0150 N 0.773
GLYMA11G11290 Glycine max GLYMA11G11290 N 0.773
Gorai.002G003500 Gossypium raimondii Gorai.002G003500 N 0.758
BRADI3G01960 Brachypodium distachyon BRADI3G01960 N 0.758
Solyc10g055250.1 Solanum lycopersicum Solyc10g055250.1 I 0.758
evm.TU.supercontig_37.170 Carica papaya evm.TU.supercontig_37.170 N 0.758
GLYMA04G00660 Glycine max GLYMA04G00660 N 0.758
cassava12557.valid.m1 Manihot esculenta cassava12557.valid.m1 N 0.758
PK11650.1 Cannabis sativa PK11650.1 N 0.750
Lus10027839.g Linum usitatissimum Lus10027839.g N 0.742
POPTR_0004s17840 Populus trichocarpa POPTR_0004s17840 N 0.742
Lus10005066.g Linum usitatissimum Lus10005066.g N 0.742
PGSC0003DMG400001591 Solanum tuberosum PGSC0003DMG400001591 N 0.742
Eucgr.I01395 Eucalyptus grandis Eucgr.I01395 N 0.741
estExt_fgeneshCV_pm.C_10002 Chlorella vulgaris estExt_fgeneshCV_pm.C_10002 N 0.727
GRMZM2G389768 Zea mays GRMZM2G389768 N 0.727
mgf001526m Mimulus guttatus mgf001526m N 0.727
mgf014458m Mimulus guttatus mgf014458m N 0.727
BRADI1G02650 Brachypodium distachyon BRADI1G02650 N 0.727
estExt_fgenesh1_pg.C_10541 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pg.C_10541 N 0.727
OGLUM02G01470 Oryza glumaepatula OGLUM02G01470 N 0.727
POPTR_0009s13460 Populus trichocarpa POPTR_0009s13460 N 0.727
Sb04g001720 Sorghum bicolor Sb04g001720 N 0.727
OPUNC02G01060 Oryza punctata OPUNC02G01060 N 0.727
SapurV1A.0514s0160 Salix purpurea SapurV1A.0514s0160 N 0.727
OS02G0121100 Oryza sativa OS02G0121100 N 0.727
LPERR02G01370 Leersia perrieri LPERR02G01370 N 0.727
Solyc01g111280.2 Solanum lycopersicum Solyc01g111280.2 N 0.727
BGIOSGA007226 Oryza indica BGIOSGA007226 N 0.727
OMERI02G00930 Oryza meridionalis OMERI02G00930 N 0.727
ORUFI02G01580 Oryza rufipogon ORUFI02G01580 N 0.727
Pavir.J33226 Panicum virgatum Pavir.J33226 N 0.727
Traes_6AS_539B381F1 Triticum aestivum Traes_6AS_539B381F1 N 0.727
ONIVA02G01490 Oryza nivara ONIVA02G01490 N 0.727
Pavir.J33349 Panicum virgatum Pavir.J33349 N 0.712
Lus10025058.g Linum usitatissimum Lus10025058.g N 0.712
VIT_04s0023g03520 Vitis vinifera VIT_04s0023g03520 N 0.712
OBART02G01600 Oryza barthii OBART02G01600 N 0.712
ORGLA02G0014700 Oryza glaberrima ORGLA02G0014700 N 0.712
ATGRP2B Arabidopsis lyrata fgenesh2_kg.4__14__AT2G21060.1 I 0.712
BRADI1G02640 Brachypodium distachyon BRADI1G02640 N 0.712
Bo3g141510 Brassica oleracea Bo3g141510 I 0.712
SELMODRAFT_186937 Selaginella moellendorffii SELMODRAFT_186937 N 0.712
SELMODRAFT_187582 Selaginella moellendorffii SELMODRAFT_187582 N 0.712
Bostr.25542s0051 Boechera stricta Bostr.25542s0051 I 0.712
mgf015980m Mimulus guttatus mgf015980m I 0.712
CSP4 Arabidopsis thaliana AT2G21060 D 0.712
AMTR_s00041p00167350 Amborella trichopoda AMTR_s00041p00167350 N 0.712
Cagra.2961s0009 Capsella grandiflora Cagra.2961s0009 I 0.712