CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK26692.1
(
Cannabis sativa
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00313 (CSD)
IPR002059
PK26692.1
T165537_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CSP4
M01902_2.00
Arabidopsis thaliana
AAWAAAAM
KTTTTWTT
PBM
Weirauch et al.(2014)
pTH7494
0.745
0.745
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK26692.1
CSD
20
66
LNGTVKWFSDQKGYGFITPSDGSEDLFVHQSAIRSDGFRSLADGETV
Links
Other
CSD
family TFs
Other
Cannabis sativa
TFs
23 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Solyc01g111300.2
Solanum lycopersicum
Solyc01g111300.2
N
0.851
Gorai.005G253200
Gossypium raimondii
Gorai.005G253200
I
0.809
MDP0000225222
Malus domestica
MDP0000225222
N
0.809
Solyc10g055250.1
Solanum lycopersicum
Solyc10g055250.1
I
0.766
mgf001526m
Mimulus guttatus
mgf001526m
N
0.766
mgf014458m
Mimulus guttatus
mgf014458m
N
0.766
Lus10034487.g
Linum usitatissimum
Lus10034487.g
I
0.766
VIT_03s0038g02130
Vitis vinifera
VIT_03s0038g02130
I
0.745
VIT_04s0023g03520
Vitis vinifera
VIT_04s0023g03520
N
0.745
gene07618-v1.0-hybrid
Fragaria vesca
gene07618-v1.0-hybrid
N
0.745
ONIVA02G01490
Oryza nivara
ONIVA02G01490
N
0.745
AMTR_s00041p00167350
Amborella trichopoda
AMTR_s00041p00167350
N
0.745
Bo3g141510
Brassica oleracea
Bo3g141510
I
0.723
CSP3
Arabidopsis thaliana
AT2G17870
N
0.723
chr3.CM0112.180.nd
Lotus japonicus
chr3.CM0112.180.nd
N
0.702
Thhalv10022795m.g
Eutrema salsugineum
Thhalv10022795m.g
N
0.702
TRIUR3_31144
Triticum urartu
TRIUR3_31144
N
0.702
BRADI2G07090
Brachypodium distachyon
BRADI2G07090
N
0.702
Bo7g049880
Brassica oleracea
Bo7g049880
I
0.702
GLYMA04G00660
Glycine max
GLYMA04G00660
N
0.702
Phatr3_J12737
Phaeodactylum tricornutum
Phatr3_J12737
N
0.702
PRUPE_ppa010531mg
Prunus persica
PRUPE_ppa010531mg
N
0.702
Pm026767
Prunus mume
Pm026767
N
0.702