ybx3.S (Xenopus laevis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 XB-GENE-1007563 T165579_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
YBX1
M04661_2.00 		Homo sapiens
GRTGGWACR
YGTWCCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX 		0.795 0.795
YBX1
M10411_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q3 		0.795 0.795
YBX1
M10412_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$YB1_Q4 		0.795 0.795
YBX1
M04662_2.00 		Homo sapiens
GRTGKDRCD
HGYHMCAYC		 SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX 		0.795 0.795
NEMVEDRAFT_v1g104083
M01207_2.00 		Nematostella vectensis
NNNDDHRN
NYDHHNNN		 PBM
Lambert et al.(2019)
pTH9768 		0.718 0.718
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH94195 CSD 36 74

Links

Other CSD family TFs
Other Xenopus laevis TFs

170 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
YBX1 Dasypus novemcinctus ENSDNOG00000036760 I 0.974
YBX1 Homo sapiens ENSG00000065978 D 0.974
Ogr10632 Ophisaurus gracilis Ogr10632 I 0.821
ENSLOCG00000013819 Lepisosteus oculatus ENSLOCG00000013819 I 0.821
ENSAMXG00000007090 Astyanax mexicanus ENSAMXG00000007090 I 0.821
ENSONIG00000018954 Oreochromis niloticus ENSONIG00000018954 I 0.821
ybx2 Xenopus tropicalis XB-GENE-5798907 I 0.821
ybx2.L Xenopus laevis XB-GENE-6252609 I 0.821
ENSPPYG00000004279 Pongo abelii ENSPPYG00000004279 I 0.795
ENSPSIG00000009247 Pelodiscus sinensis ENSPSIG00000009247 I 0.795
ENSPFOG00000011441 Poecilia formosa ENSPFOG00000011441 I 0.795
YBX2 Procavia capensis ENSPCAG00000008019 I 0.795
ENSPANG00000024250 Papio anubis ENSPANG00000024250 I 0.795
Ybx1 Mus musculus ENSMUSG00000028639 I 0.795
ENSPSIG00000011017 Pelodiscus sinensis ENSPSIG00000011017 I 0.795
ENSPSIG00000012364 Pelodiscus sinensis ENSPSIG00000012364 I 0.795
YBX3 Pteropus vampyrus ENSPVAG00000006740 I 0.795
Ybx3 Rattus norvegicus ENSRNOG00000005480 I 0.795
Ybx1 Rattus norvegicus ENSRNOG00000023786 I 0.795
YBX1 Pteropus vampyrus ENSPVAG00000005504 I 0.795
ENSPANG00000016576 Papio anubis ENSPANG00000016576 I 0.795
Ybx2 Mus musculus ENSMUSG00000018554 I 0.795
Ybx2 Rattus norvegicus ENSRNOG00000017117 I 0.795
ENSPANG00000010280 Papio anubis ENSPANG00000010280 I 0.795
ENSOARG00000011562 Ovis aries ENSOARG00000011562 I 0.795
ENSOARG00000020447 Ovis aries ENSOARG00000020447 I 0.795
YBX1 Ornithorhynchus anatinus ENSOANG00000011725 I 0.795
ENSOANG00000001663 Ornithorhynchus anatinus ENSOANG00000001663 I 0.795
ENSNLEG00000008063 Nomascus leucogenys ENSNLEG00000008063 I 0.795
ENSNLEG00000012324 Nomascus leucogenys ENSNLEG00000012324 I 0.795
ENSOARG00000020919 Ovis aries ENSOARG00000020919 I 0.795
YBX2 Otolemur garnettii ENSOGAG00000004392 I 0.795
ybx1 Oryzias latipes ENSORLG00000004225 I 0.795
Ybx3 Mus musculus ENSMUSG00000030189 I 0.795
YBX2 Ochotona princeps ENSOPRG00000013773 I 0.795
YBX2 Sorex araneus ENSSARG00000000488 I 0.795
ENSONIG00000002062 Oreochromis niloticus ENSONIG00000002062 I 0.795
ENSPANG00000013156 Papio anubis ENSPANG00000013156 I 0.795
YBX3 Sus scrofa ENSSSCG00000000633 I 0.795
ENSBTAP00000012735-D1 Bos grunniens ENSBTAP00000012735-D1 I 0.795
ENSP00000007699-D1 Bos grunniens ENSP00000007699-D1 I 0.795
ENSP00000228251 Macaca fascicularis ENSP00000228251 I 0.795
Brh_R007443 Buceros rhinoceros Brh_R007443 I 0.795
Alligator_sinensis_CCG005029.1 Alligator sinensis Alligator_sinensis_CCG005029.1 I 0.795
Aan_R014295 Calypte anna Aan_R014295 I 0.795
Afo_R014263 Aptenodytes forsteri Afo_R014263 I 0.795
Gfo_R007354 Geospiza fortis Gfo_R007354 I 0.795
Pvit_10025 Pogona vitticeps Pvit_10025 I 0.795
ybx2.S Xenopus laevis XB-GENE-6254213 I 0.795
ybx1.S Xenopus laevis XB-GENE-865405 I 0.795
ybx1 Xenopus tropicalis XB-GENE-480746 I 0.795
CAA42778 Xenopus laevis CAA42778 I 0.795
AAH42217 Xenopus laevis AAH42217 I 0.795
AAI30161 Xenopus laevis AAI30161 I 0.795
Aan_R001440 Calypte anna Aan_R001440 I 0.795
ENSXMAG00000018674 Xiphophorus maculatus ENSXMAG00000018674 I 0.795
ENSSTOG00000008630 Ictidomys tridecemlineatus ENSSTOG00000008630 I 0.795
YBX2 Tupaia belangeri ENSTBEG00000001266 I 0.795
ENSSSCG00000030357 Sus scrofa ENSSSCG00000030357 I 0.795
YBX2 Sus scrofa ENSSSCG00000017938 I 0.795
ENSSHAG00000014452 Sarcophilus harrisii ENSSHAG00000014452 I 0.795
YBX3 Monodelphis domestica ENSMODG00000018248 I 0.795
YBX3 Tupaia belangeri ENSTBEG00000012570 I 0.795
YBX3 Taeniopygia guttata ENSTGUG00000012047 I 0.795
YBX1 Vicugna pacos ENSVPAG00000000068 I 0.795
YBX3 Vicugna pacos ENSVPAG00000000876 I 0.795
YBX2 Tursiops truncatus ENSTTRG00000009780 I 0.795
ybx1 Takifugu rubripes ENSTRUG00000015333 I 0.795
YBX1 Taeniopygia guttata ENSTGUG00000017262 I 0.795
ybx1 Tetraodon nigroviridis ENSTNIG00000011989 I 0.795
ENSSHAG00000003262 Sarcophilus harrisii ENSSHAG00000003262 I 0.795
YBX1 Otolemur garnettii ENSOGAG00000006784 I 0.795
ENSCSAG00000008744 Chlorocebus sabaeus ENSCSAG00000008744 I 0.795
ybx1 Danio rerio ENSDARG00000004757 I 0.795
YBX2 Dasypus novemcinctus ENSDNOG00000013746 I 0.795
YBX3 Cavia porcellus ENSCPOG00000011329 I 0.795
YBX1 Cavia porcellus ENSCPOG00000010888 I 0.795
ENSCJAG00000031567 Callithrix jacchus ENSCJAG00000031567 I 0.795
YBX2 Cavia porcellus ENSCPOG00000009543 I 0.795
Ybx3 Dipodomys ordii ENSDORG00000009103 I 0.795
Ybx2 Dipodomys ordii ENSDORG00000010882 I 0.795
ENSECAG00000023592 Equus caballus ENSECAG00000023592 I 0.795
YBX1 Erinaceus europaeus ENSEEUG00000005657 I 0.795
YBX3 Equus caballus ENSECAG00000013777 I 0.795
ENSECAG00000011356 Equus caballus ENSECAG00000011356 I 0.795
ENSECAG00000008961 Equus caballus ENSECAG00000008961 I 0.795
YBX2 Equus caballus ENSECAG00000009996 I 0.795
ENSCJAG00000021660 Callithrix jacchus ENSCJAG00000021660 I 0.795
YBX2 Callithrix jacchus ENSCJAG00000016581 I 0.795
ENSAPLG00000003147 Anas platyrhynchos ENSAPLG00000003147 I 0.795
YBX2 Bos taurus ENSBTAG00000009126 I 0.795
ENSAMXG00000014478 Astyanax mexicanus ENSAMXG00000014478 I 0.795
ENSAMEG00000016564 Ailuropoda melanoleuca ENSAMEG00000016564 I 0.795
ENSAMEG00000000494 Ailuropoda melanoleuca ENSAMEG00000000494 I 0.795
ENSAMEG00000009393 Ailuropoda melanoleuca ENSAMEG00000009393 I 0.795
YBX3 Bos taurus ENSBTAG00000009663 I 0.795
YBX1 Bos taurus ENSBTAG00000017368 I 0.795
YBX3 Choloepus hoffmanni ENSCHOG00000011988 I 0.795
ENSCJAG00000003155 Callithrix jacchus ENSCJAG00000003155 I 0.795
ENSCAFG00000017286 Canis familiaris ENSCAFG00000017286 I 0.795
ENSCAFG00000016128 Canis familiaris ENSCAFG00000016128 I 0.795
YBX1 Canis familiaris ENSCAFG00000002541 I 0.795
YBX3 Canis familiaris ENSCAFG00000013401 I 0.795
YBX3 Erinaceus europaeus ENSEEUG00000010415 I 0.795
ENSCSAG00000011857 Chlorocebus sabaeus ENSCSAG00000011857 I 0.795
YBX3 Macaca mulatta ENSMMUG00000022469 I 0.795
YBX1 Meleagris gallopavo ENSMGAG00000006879 I 0.795
YBX3 Gorilla gorilla ENSGGOG00000001352 I 0.795
ENSGALG00000018512 Gallus gallus ENSGALG00000018512 I 0.795
YBX3 Loxodonta africana ENSLAFG00000017247 I 0.795
ENSLACG00000018135 Latimeria chalumnae ENSLACG00000018135 I 0.795
ENSLOCG00000002530 Lepisosteus oculatus ENSLOCG00000002530 I 0.795
ENSMICG00000014984 Microcebus murinus ENSMICG00000014984 I 0.795
YBX2 Loxodonta africana ENSLAFG00000014006 I 0.795
ENSLAFG00000007597 Loxodonta africana ENSLAFG00000007597 I 0.795
ENSMMUG00000013136 Macaca mulatta ENSMMUG00000013136 I 0.795
ENSMMUG00000022712 Macaca mulatta ENSMMUG00000022712 I 0.795
YBX1 Gallus gallus ENSGALG00000004848 I 0.795
ENSFALG00000003661 Ficedula albicollis ENSFALG00000003661 I 0.795
ENSMICG00000004602 Microcebus murinus ENSMICG00000004602 I 0.795
YBX2 Echinops telfairi ENSETEG00000014271 I 0.795
YBX1 Monodelphis domestica ENSMODG00000017214 I 0.795
YBX3 Echinops telfairi ENSETEG00000002557 I 0.795
ENSMMUG00000032563 Macaca mulatta ENSMMUG00000032563 I 0.795
YBX2 Felis catus ENSFCAG00000018097 I 0.795
YBX3 Felis catus ENSFCAG00000027748 I 0.795
ybx1 Gasterosteus aculeatus ENSGACG00000006447 I 0.795
YBX3 Meleagris gallopavo ENSMGAG00000014224 I 0.795
YBX3 Homo sapiens ENSG00000060138 I 0.795
HMEL008461 Heliconius melpomene HMEL008461 I 0.769
e_gw.440.24.1 Branchiostoma floridae e_gw.440.24.1 I 0.769
YBX1 Pan troglodytes ENSPTRG00000006456 I 0.769
KGM_01291 Danaus plexippus KGM_01291 I 0.769
ENSGMOG00000015216 Gadus morhua ENSGMOG00000015216 I 0.769
ENSMODG00000022963 Monodelphis domestica ENSMODG00000022963 I 0.769
ENSPANG00000019627 Papio anubis ENSPANG00000019627 I 0.769
YBX3 Procavia capensis ENSPCAG00000001397 I 0.769
ENSOGAG00000034677 Otolemur garnettii ENSOGAG00000034677 I 0.769
BGIBMGA000526 Bombyx mori BGIBMGA000526 I 0.769
GK16710 Drosophila willistoni FBgn0218712 I 0.769
GL15684 Drosophila persimilis FBgn0153288 I 0.769
GF10852 Drosophila ananassae FBgn0087892 I 0.769
GA23502 Drosophila pseudoobscura FBgn0244903 I 0.769
LDEC002142 Leptinotarsa decemlineata LDEC002142 I 0.744
ENSAPLG00000004899 Anas platyrhynchos ENSAPLG00000004899 I 0.744
Sakowv30002198m.g Saccoglossus kowalevskii Sakowv30002198m.g I 0.744
fgenesh2_pg.scaffold_14000192 Branchiostoma floridae fgenesh2_pg.scaffold_14000192 I 0.744
MCINX006244 Melitaea cinxia MCINX006244 I 0.744
ENSEEUG00000007494 Erinaceus europaeus ENSEEUG00000007494 I 0.744
SPU_003107 Strongylocentrotus purpuratus SPU_003107 I 0.744
LOC100912427 Rattus norvegicus ENSRNOG00000032902 I 0.744
GB54355 Apis mellifera GB54355 I 0.744
ENSPANG00000005177 Papio anubis ENSPANG00000005177 I 0.744
TC013925 Tribolium castaneum TC013925 I 0.744
YQE_07192 Dendroctonus ponderosae YQE_07192 I 0.744
ENSOGAG00000027853 Otolemur garnettii ENSOGAG00000027853 I 0.744
ENSOGAG00000032929 Otolemur garnettii ENSOGAG00000032929 I 0.744
ENSCJAG00000010572 Callithrix jacchus ENSCJAG00000010572 I 0.744
CapteG166603 Capitella teleta CapteG166603 I 0.718
BGLB002206 Biomphalaria glabrata BGLB002206 I 0.718
ENSDNOG00000040947 Dasypus novemcinctus ENSDNOG00000040947 I 0.718
ENSCJAG00000035469 Callithrix jacchus ENSCJAG00000035469 I 0.718
PHUM156710 Pediculus humanus PHUM156710 I 0.718
ENSCJAG00000018832 Callithrix jacchus ENSCJAG00000018832 I 0.718
Hsal_07052--XP_393344.3_APIME Harpegnathos saltator Hsal_07052--XP_393344.3_APIME I 0.718
Ocbimv22002282m.g Octopus bimaculoides Ocbimv22002282m.g I 0.718
Cflo_08983--XP_393344.3_APIME Camponotus floridanus Cflo_08983--XP_393344.3_APIME I 0.718
ENSCJAG00000035120 Callithrix jacchus ENSCJAG00000035120 I 0.718
ISCW022953 Ixodes scapularis ISCW022953 N 0.718
LCUP004743 Lucilia cuprina LCUP004743 I 0.718