CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Minc12652
(
Meloidogyne incognita
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00313 (CSD)
IPR002059
Minc12652
T165618_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN
NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.750
0.750
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR
YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.732
0.732
YBX1
M10411_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.732
0.732
YBX1
M10412_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.732
0.732
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD
HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.732
0.732
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD
HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.714
0.714
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc12652a
CSD
85
154
VTGIVKWFNVMNGYGFICRDDTNEDIFVHNSAISKNNPEKAQRSLGDGEKVLFDVVEGTKGPEASNVTGP
Minc12652b
CSD
1
60
MNGYGFICRDDTNEDIFVHNSAISKNNPEKAQRSLGDGEKVLFDVVEGTKGPEASNVTGP
Links
Other
CSD
family TFs
Other
Meloidogyne incognita
TFs
325 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy