nRc.2.0.1.g10725 (Romanomermis culicivorax)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 nRc.2.0.1.g10725 T165863_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD

HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.818 0.818
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.788 0.788
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.788 0.788
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.788 0.788
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.788 0.788
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN

NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.773 0.773
Smp_097750
M01208_2.00
Schistosoma mansoni
TAGATAGA

TCTATCTA
PBM
Lambert et al.(2019)
pTH7807
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t10725-RA CSD 59 128

Links

Other CSD family TFs
Other Romanomermis culicivorax TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
RELA Homo sapiens ENSG00000173039 D 0.000
Rela Mus musculus ENSMUSG00000024927 D 0.000
RELA Sus scrofa ENSSSCG00000012981 I 0.000
RELA Sorex araneus ENSSARG00000003535 I 0.000
Rela Rattus norvegicus ENSRNOG00000030888 I 0.000
RELA Pteropus vampyrus ENSPVAG00000009983 I 0.000
RELA Pan troglodytes ENSPTRG00000003889 I 0.000
ENSPSIG00000002944 Pelodiscus sinensis ENSPSIG00000002944 I 0.000
ENSPPYG00000003053 Pongo abelii ENSPPYG00000003053 I 0.000
ENSPANG00000013650 Papio anubis ENSPANG00000013650 I 0.000
ENSSTOG00000027336 Ictidomys tridecemlineatus ENSSTOG00000027336 I 0.000
RELA Tupaia belangeri ENSTBEG00000004751 I 0.000
rela.L Xenopus laevis XB-GENE-946512 I 0.000
rela Xenopus tropicalis XB-GENE-946506 I 0.000
Pvit_10466 Pogona vitticeps Pvit_10466 I 0.000
Ogr00666 Ophisaurus gracilis Ogr00666 I 0.000
Myotis_brandtii_Rela_10030730 Myotis brandtii Myotis_brandtii_Rela_10030730 I 0.000
ENSP00000384273 Macaca fascicularis ENSP00000384273 I 0.000
ENSP00000384273-D1 Bos grunniens ENSP00000384273-D1 I 0.000
Cmyd_10013204 Chelonia mydas Cmyd_10013204 I 0.000
RELA Tursiops truncatus ENSTTRG00000002311 I 0.000
ENSOPRG00000010827 Ochotona princeps ENSOPRG00000010827 I 0.000
RELA Otolemur garnettii ENSOGAG00000014117 I 0.000
ENSOARG00000017426 Ovis aries ENSOARG00000017426 I 0.000
RELA Felis catus ENSFCAG00000005696 I 0.000
RELA Equus caballus ENSECAG00000013763 I 0.000
RELA Dasypus novemcinctus ENSDNOG00000039743 I 0.000
ENSCSAG00000007981 Chlorocebus sabaeus ENSCSAG00000007981 I 0.000
RELA Cavia porcellus ENSCPOG00000020593 I 0.000
RELA Callithrix jacchus ENSCJAG00000002037 I 0.000
ENSCHOG00000004207 Choloepus hoffmanni ENSCHOG00000004207 I 0.000
RELA Canis familiaris ENSCAFG00000013334 I 0.000
ENSAMEG00000017369 Ailuropoda melanoleuca ENSAMEG00000017369 I 0.000
RELA Gorilla gorilla ENSGGOG00000011810 I 0.000
ENSOANG00000004820 Ornithorhynchus anatinus ENSOANG00000004820 I 0.000
ENSNLEG00000005769 Nomascus leucogenys ENSNLEG00000005769 I 0.000
ENSMPUG00000011637 Mustela putorius furo ENSMPUG00000011637 I 0.000
RELA Monodelphis domestica ENSMODG00000009603 I 0.000
RELA Macaca mulatta ENSMMUG00000007418 I 0.000
RELA Myotis lucifugus ENSMLUG00000008727 I 0.000
RELA Microcebus murinus ENSMICG00000008872 I 0.000
RELA Loxodonta africana ENSLAFG00000021967 I 0.000
RELA Bos taurus ENSBTAG00000013895 I 0.000