nRc.2.0.1.g10725 (Romanomermis culicivorax)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 nRc.2.0.1.g10725 T165863_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
cey-1
M01903_2.00
Caenorhabditis elegans
NNNGRTRDD

HHYAYCNNN
PBM
Weirauch et al.(2014)
pTH8991
0.818 0.818
YBX1
M04661_2.00
Homo sapiens
GRTGGWACR

YGTWCCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_HT-SELEX
0.788 0.788
YBX1
M10411_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q3
0.788 0.788
YBX1
M10412_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$YB1_Q4
0.788 0.788
YBX1
M04662_2.00
Homo sapiens
GRTGKDRCD

HGYHMCAYC
SELEX
Yin et al.(2017)
YBX1_eDBD_Methyl-HT-SELEX
0.788 0.788
NEMVEDRAFT_v1g104083
M01207_2.00
Nematostella vectensis
NNNDDHRN

NYDHHNNN
PBM
Lambert et al.(2019)
pTH9768
0.773 0.773
Smp_097750
M01208_2.00
Schistosoma mansoni
TAGATAGA

TCTATCTA
PBM
Lambert et al.(2019)
pTH7807
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nRc.2.0.1.t10725-RA CSD 59 128

Links

Other CSD family TFs
Other Romanomermis culicivorax TFs

348 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ANCCAN_13991 Ancylostoma caninum ANCCAN_13991 I 0.000
ANCDUO_19569 Ancylostoma duodenale ANCDUO_19569 I 0.000
ASIM_0000241101 Anisakis simplex ASIM_0000241101 I 0.000
ASIM_0000264301 Anisakis simplex ASIM_0000264301 I 0.000
ASIM_0001608201 Anisakis simplex ASIM_0001608201 I 0.000
Bm2567 Brugia malayi Bm2567 D 0.000
BTMF_0001653601 Brugia timori BTMF_0001653601 I 0.000
BTMF_0001659501 Brugia timori BTMF_0001659501 I 0.000
BXY_0200700 Bursaphelenchus xylophilus BXY_0200700 I 0.000
BXY_0352300 Bursaphelenchus xylophilus BXY_0352300 I 0.000
CBG09413 Caenorhabditis briggsae CBG09413 D 0.000
CBN06605 Caenorhabditis brenneri CBN06605 D 0.000
CJA05020 Caenorhabditis japonica CJA05020 I 0.000
CJA05633_CONSTRUCT PBM CONSTRUCTS CJA05633_CONSTRUCT D 0.000
CJA37832 Caenorhabditis japonica CJA37832 I 0.000
CRE31027 Caenorhabditis remanei CRE31027 I 0.000
dmd-10 Caenorhabditis elegans WBGene00007929 D 0.000
dmd-3 Caenorhabditis elegans WBGene00012832 D 0.000
DME_0001004201 Dracunculus medinensis DME_0001004201 I 0.000
EEL_0000689901 Elaeophora elaphi EEL_0000689901 I 0.000
EVEC_0001123001 Enterobius vermicularis EVEC_0001123001 I 0.000
Hba_18605 Heterorhabditis bacteriophora Hba_18605 I 0.000
L596_g998 Steinernema carpocapsae L596_g998 I 0.000
L889_g10733 Steinernema feltiae L889_g10733 I 0.000
L892_g22881 Steinernema scapterisci L892_g22881 I 0.000
L892_g27879 Steinernema scapterisci L892_g27879 I 0.000
L893_g31098 Steinernema glaseri L893_g31098 I 0.000
L898_g30067 Steinernema monticolum L898_g30067 I 0.000
L898_g33808 Steinernema monticolum L898_g33808 I 0.000
LOAG_11460 Loa loa LOAG_11460 I 0.000
nAv.1.0.1.g01085 Acanthocheilonema viteae nAv.1.0.1.g01085 I 0.000
nAv.1.0.1.g09212 Acanthocheilonema viteae nAv.1.0.1.g09212 I 0.000
NBR_0000774001 Nippostrongylus brasiliensis NBR_0000774001 I 0.000
nDi.2.2.2.g08811 Dirofilaria immitis nDi.2.2.2.g08811 I 0.000
nDi.2.2.2.g10419 Dirofilaria immitis nDi.2.2.2.g10419 I 0.000
NECAME_07661 Necator americanus NECAME_07661 I 0.000
nLs.2.1.2.g05589 Litomosoides sigmodontis nLs.2.1.2.g05589 I 0.000
nOo.2.0.1.g05035 Onchocerca ochengi nOo.2.0.1.g05035 I 0.000
nOo.2.0.1.g12565 Onchocerca ochengi nOo.2.0.1.g12565 I 0.000
OESDEN_09202 Oesophagostomum dentatum OESDEN_09202 I 0.000
SPAL_0001233100 Strongyloides papillosus SPAL_0001233100 I 0.000
SVE_0753200 Strongyloides venezuelensis SVE_0753200 I 0.000
SVE_1703300 Strongyloides venezuelensis SVE_1703300 I 0.000
TCLT_0000243901 Thelazia callipaeda TCLT_0000243901 I 0.000
TELCIR_05158 Teladorsagia circumcincta TELCIR_05158 I 0.000
WBGene00242643 Onchocerca volvulus WBGene00242643 I 0.000
WUBG_11979 Wuchereria bancrofti WUBG_11979 D 0.000