ENSGACG00000009915 (Gasterosteus aculeatus)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02376 (CUT)
PF00046 (Homeobox) 		IPR003350
IPR001356 		ENSGACG00000009915 T167065_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CUX1
M02946_2.00 		Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_1 		0.812 0.812
CUX1
M02947_2.00 		Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT		 SELEX
Jolma et al.(2013)
CUX1_2 		0.812 0.812
CUX1
M02948_2.00 		Homo sapiens
TDATCRATNN
NNATYGATHA		 SELEX
Jolma et al.(2013)
CUX1_3 		0.812 0.812
CUX1
M04679_2.00 		Homo sapiens
NDATCRATNN
NNATYGATHN		 SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX 		0.856 0.856
CUX1
M09023_2.00 		Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C 		0.856 0.856
Cux1
M09024_2.00 		Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY		 Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C 		0.856 0.856
CUX1
M10422_2.00 		Homo sapiens
CCAATAATCRAT
ATYGATTATTGG		 Transfac
Matys et al.(2006)
V$CDP_01 		0.812 0.812
CUX1
M10423_2.00 		Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH		 Transfac
Matys et al.(2006)
V$CDP_02 		0.812 0.812
CUX1
M10424_2.00 		Homo sapiens
SCVATCRATN
NATYGATBGS		 Transfac
Matys et al.(2006)
V$CDPCR1_01 		0.812 0.812
CUX1
M10425_2.00 		Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG		 Transfac
Matys et al.(2006)
V$CDPCR3_01 		0.812 0.812
CUX1
M10426_2.00 		Homo sapiens
SVSATCRATB
VATYGATSBS		 Transfac
Matys et al.(2006)
V$CDPCR3HD_01 		0.812 0.812
CUX1
M10427_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$CDP_Q6_01 		0.856 0.856
CUX1
M10416_2.00 		Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH		 Transfac
Matys et al.(2006)
V$CLOX_01 		0.856 0.856
CUX1
M04680_2.00 		Homo sapiens
NBATTGATHR
YDATCAATVN		 SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX 		0.856 0.856
CUX2
M02940_2.00 		Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT		 SELEX
Jolma et al.(2013)
CUX2_1 		0.738 0.738
CUX2
M02941_2.00 		Homo sapiens
DDATYGATYA
TRATCRATHH		 SELEX
Jolma et al.(2013)
CUX2_2 		0.738 0.738
CUX2
M04665_2.00 		Homo sapiens
NTRATCGATYRN
NYRATCGATYAN		 SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX 		0.738 0.738
CUX2
M04666_2.00 		Homo sapiens
BYRATCGATYRB
VYRATCGATYRV		 SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX 		0.738 0.738
Cux2
M09025_2.00 		Mus musculus
NBBATTGATYD
HRATCAATVVN		 Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C 		0.734 0.734
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSGACP00000013105 CUT 467 544
ENSGACP00000013105 CUT 798 861
ENSGACP00000013105 CUT 959 1037
ENSGACP00000013105 Homeodomain 1082 1138
ENSGACP00000013112 CUT 545 622
ENSGACP00000013112 CUT 888 945
ENSGACP00000013112 CUT 1043 1121
ENSGACP00000013112 Homeodomain 1166 1222

Links

Other CUT,Homeodomain family TFs
Other Gasterosteus aculeatus TFs

83 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.946
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.925
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.912
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.906
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.898
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.864
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.856
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.856
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.856
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.856
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.856
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.856
Aan_R003487 Calypte anna Aan_R003487 I 0.856
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.856
Cmyd_10006308 Chelonia mydas Cmyd_10006308 I 0.852
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 0.852
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.837
CUX1 Felis catus ENSFCAG00000008074 I 0.837
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.837
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.837
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.833
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.833
CUX1 Microcebus murinus ENSMICG00000010274 I 0.819
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.802
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.790
cux2 Xenopus tropicalis XB-GENE-487236 I 0.782
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.782
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.782
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.782
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.782
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.780
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.780
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.773
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.773
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.771
Aan_R010335 Calypte anna Aan_R010335 I 0.770
cux1a Danio rerio ENSDARG00000078459 I 0.770
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.769
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.769
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.767
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.765
CUX1 Bos taurus ENSBTAG00000010659 I 0.764
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.764
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.764
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.764
Cux1 Mus musculus ENSMUSG00000029705 D 0.764
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.764
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.764
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.764
CUX1 Homo sapiens ENSG00000257923 D 0.764
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.764
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.764
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.764
CUX1 Canis familiaris ENSCAFG00000013749 D 0.764
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.763
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.762
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.761
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.760
XP_002942311 Xenopus tropicalis XP_002942311 I 0.758
Tal_R013483 Tyto alba Tal_R013483 I 0.757
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.750
CUX1 Procavia capensis ENSPCAG00000004482 I 0.728
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.728
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.721
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.713
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.712
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.711
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.706
cux2b Oryzias latipes ENSORLG00000015973 I 0.705
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.705
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.705
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.705
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.704
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.704
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.704
CUX2 Gallus gallus ENSGALG00000004598 I 0.704
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.704
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.702
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.702
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.701
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.700
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.700