CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cux1
(
Mus musculus
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
ENSMUSG00000029705
T167155_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Cux1
M00379_2.00
Mus musculus
NHDHHHNN
NNDDDHDN
PBM
Berger et al.(2008)
Cutl1_3494
(Direct)
(Direct)
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW
WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
1.000
1.000
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT
ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.993
0.993
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT
ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.993
0.993
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN
NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.993
0.993
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN
NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.993
0.993
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN
NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.993
0.993
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT
ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.993
0.993
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH
DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.993
0.993
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN
NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.993
0.993
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG
CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.993
0.993
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB
VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.993
0.993
CUX1
M10427_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.993
0.993
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR
YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.993
0.993
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT
ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.885
0.885
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA
TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.885
0.885
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN
NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.885
0.885
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB
VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.885
0.885
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD
HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.878
0.878
For this family, TFs with SR scores >
0.700
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00379_2.00
Homeodomain
17
73
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000004097
CUT
456
533
EGEEIDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALR
ENSMUSP00000004097
CUT
845
921
MYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVL
ENSMUSP00000004097
CUT
1028
1106
MSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMD
ENSMUSP00000004097
Homeodomain
1151
1207
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
ENSMUSP00000135086
CUT
547
624
EGEEIDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALR
ENSMUSP00000135086
CUT
936
1012
MYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVL
ENSMUSP00000135086
CUT
1119
1197
MSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMD
ENSMUSP00000135086
Homeodomain
1242
1298
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
ENSMUSP00000135223
CUT
556
633
EGEEIDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALR
ENSMUSP00000135223
CUT
923
999
MYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVL
ENSMUSP00000135223
CUT
1106
1184
MSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMD
ENSMUSP00000135223
Homeodomain
1229
1285
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
ENSMUSP00000135370
CUT
419
496
EGEEIDTAEIARQVKEQLIKHNIGQRIFGHYVLGLSQGSVSEILARPKPWNKLTVRGKEPFHKMKQFLSDEQNILALR
ENSMUSP00000135370
CUT
808
884
MYQEVDTIELTRQVKEKLAKNGICQRIFGEKVLGLSQGSVSDMLSRPKPWSKLTQKGREPFIRMQLWLNGELGQGVL
ENSMUSP00000135370
CUT
991
1069
MSPELDTYGITKRVKEVLTDNNLGQRLFGETILGLTQGSVSDLLARPKPWHKLSLKGREPFVRMQLWLNDPNNVEKLMD
ENSMUSP00000135370
Homeodomain
1114
1170
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
ENSMUSP00000135892
Homeodomain
1234
1290
KKPRVVLAPEEKEALKRAYQQKPYPSPKTIEELATQLNLKTSTVINWFHNYRSRIRR
Links
Other
CUT,Homeodomain
family TFs
Other
Mus musculus
TFs
113 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy