Cmyd_10006308 (Chelonia mydas)
CUT,Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
Cmyd_10006308 T167412_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
Cux1
M09024_2.00
Mus musculus
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_MOUSE.H11MO.0.C
0.993 0.993
CUX1
M10416_2.00
Canis familiaris
DHDATYGATYADYDW

WHRHTRATCRATHDH
Transfac
Matys et al.(2006)
V$CLOX_01
0.993 0.993
CUX1
M02946_2.00
Homo sapiens
ATCRATHNNNDATCRAT

ATYGATHNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_1
0.986 0.986
CUX1
M02947_2.00
Homo sapiens
ATCRATHNNNNDATCRAT

ATYGATHNNNNDATYGAT
SELEX
Jolma et al.(2013)
CUX1_2
0.986 0.986
CUX1
M02948_2.00
Homo sapiens
TDATCRATNN

NNATYGATHA
SELEX
Jolma et al.(2013)
CUX1_3
0.986 0.986
CUX1
M04679_2.00
Homo sapiens
NDATCRATNN

NNATYGATHN
SELEX
Yin et al.(2017)
CUX1_eDBD_HT-SELEX
0.986 0.986
CUX1
M09023_2.00
Homo sapiens
RBRVNDATYGRTBN

NVAYCRATHNBYVY
Misc
Kulakovskiy et al.(2013)
CUX1_HUMAN.H11MO.0.C
0.986 0.986
CUX1
M10422_2.00
Homo sapiens
CCAATAATCRAT

ATYGATTATTGG
Transfac
Matys et al.(2006)
V$CDP_01
0.986 0.986
CUX1
M10423_2.00
Homo sapiens
DWDATCGATYADHDH

DHDHTRATCGATHWH
Transfac
Matys et al.(2006)
V$CDP_02
0.986 0.986
CUX1
M10424_2.00
Homo sapiens
SCVATCRATN

NATYGATBGS
Transfac
Matys et al.(2006)
V$CDPCR1_01
0.986 0.986
CUX1
M10425_2.00
Homo sapiens
CVATABNTATYKGTG

CACMRATANVTATBG
Transfac
Matys et al.(2006)
V$CDPCR3_01
0.986 0.986
CUX1
M10426_2.00
Homo sapiens
SVSATCRATB

VATYGATSBS
Transfac
Matys et al.(2006)
V$CDPCR3HD_01
0.986 0.986
CUX1
M10427_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$CDP_Q6_01
0.986 0.986
CUX1
M04680_2.00
Homo sapiens
NBATTGATHR

YDATCAATVN
SELEX
Yin et al.(2017)
CUX1_eDBD_Methyl-HT-SELEX
0.986 0.986
CUX2
M02940_2.00
Homo sapiens
ATCRATAHNNDWATCGAT

ATCGATWHNNDTATYGAT
SELEX
Jolma et al.(2013)
CUX2_1
0.885 0.885
CUX2
M02941_2.00
Homo sapiens
DDATYGATYA

TRATCRATHH
SELEX
Jolma et al.(2013)
CUX2_2
0.885 0.885
CUX2
M04665_2.00
Homo sapiens
NTRATCGATYRN

NYRATCGATYAN
SELEX
Yin et al.(2017)
CUX2_eDBD_HT-SELEX
0.885 0.885
CUX2
M04666_2.00
Homo sapiens
BYRATCGATYRB

VYRATCGATYRV
SELEX
Yin et al.(2017)
CUX2_eDBD_Methyl-HT-SELEX
0.885 0.885
Cux2
M09025_2.00
Mus musculus
NBBATTGATYD

HRATCAATVVN
Misc
Kulakovskiy et al.(2013)
CUX2_MOUSE.H11MO.0.C
0.878 0.878
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10006308 CUT 214 291
Cmyd_10006308 CUT 600 674
Cmyd_10006308 CUT 764 842
Cmyd_10006308 Homeodomain 887 943

Links

Other CUT,Homeodomain family TFs
Other Chelonia mydas TFs

110 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aan_R003487 Calypte anna Aan_R003487 I 0.997
Aan_R010335 Calypte anna Aan_R010335 I 0.883
Afo_R009437 Aptenodytes forsteri Afo_R009437 I 0.997
Alligator_sinensis_CCG004936.1 Alligator sinensis Alligator_sinensis_CCG004936.1 I 0.997
Alligator_sinensis_CCG016555.1 Alligator sinensis Alligator_sinensis_CCG016555.1 I 0.878
Cmyd_10015658 Chelonia mydas Cmyd_10015658 I 0.878
CUX1 Pan troglodytes ENSPTRG00000019531 I 0.979
CUX1 Felis catus ENSFCAG00000008074 I 0.986
CUX1 Pteropus vampyrus ENSPVAG00000017756 I 0.983
CUX1 Homo sapiens ENSG00000257923 D 0.979
CUX1 Ochotona princeps ENSOPRG00000000165 I 0.982
CUX1 Microcebus murinus ENSMICG00000010274 I 0.988
Cux1 Mus musculus ENSMUSG00000029705 D 0.986
CUX1 Monodelphis domestica ENSMODG00000013581 I 0.993
CUX1 Loxodonta africana ENSLAFG00000002555 I 0.986
CUX1 Macaca mulatta ENSMMUG00000021461 I 0.979
CUX1 Myotis lucifugus ENSMLUG00000007264 I 0.986
CUX1 Meleagris gallopavo ENSMGAG00000003398 I 0.993
CUX1 Erinaceus europaeus ENSEEUG00000005128 I 0.976
Cux1 Rattus norvegicus ENSRNOG00000001424 I 0.986
CUX1 Canis familiaris ENSCAFG00000013749 D 0.986
CUX1 Anolis carolinensis ENSACAG00000015088 I 0.979
CUX1 Tursiops truncatus ENSTTRG00000014625 I 0.982
CUX1 Procavia capensis ENSPCAG00000004482 I 0.779
CUX1 Taeniopygia guttata ENSTGUG00000004386 I 0.997
CUX1 Callithrix jacchus ENSCJAG00000016076 I 0.976
CUX1 Bos taurus ENSBTAG00000010659 I 0.986
CUX1 Takifugu rubripes ENSTRUG00000008546 I 0.822
cux1a Danio rerio ENSDARG00000078459 I 0.934
CUX2 Monodelphis domestica ENSMODG00000012254 I 0.875
cux2 Xenopus tropicalis XB-GENE-487236 I 0.858
CUX2 Myotis lucifugus ENSMLUG00000003239 I 0.882
Cux2 Mus musculus ENSMUSG00000042589 D 0.872
CUX2 Tursiops truncatus ENSTTRG00000000945 I 0.878
Cux2 Rattus norvegicus ENSRNOG00000001259 I 0.862
CUX2 Sus scrofa ENSSSCG00000009831 I 0.882
CUX2 Pteropus vampyrus ENSPVAG00000013176 I 0.878
CUX2 Taeniopygia guttata ENSTGUG00000006470 I 0.862
CUX2 Ochotona princeps ENSOPRG00000006461 I 0.878
CUX2 Otolemur garnettii ENSOGAG00000029919 I 0.882
CUX2 Oryctolagus cuniculus ENSOCUG00000021923 I 0.882
CUX2 Pan troglodytes ENSPTRG00000005455 I 0.868
CUX2 Ornithorhynchus anatinus ENSOANG00000004793 I 0.874
CUX2 Meleagris gallopavo ENSMGAG00000005225 I 0.875
CUX2 Gallus gallus ENSGALG00000004598 I 0.875
CUX2 Canis familiaris ENSCAFG00000008575 I 0.882
CUX2 Homo sapiens ENSG00000111249 D 0.882
CUX2 Bos taurus ENSBTAG00000008571 I 0.882
CUX2 Felis catus ENSFCAG00000003176 I 0.882
CUX2 Dasypus novemcinctus ENSDNOG00000039959 I 0.875
CUX2 Callithrix jacchus ENSCJAG00000011694 I 0.882
CUX2 Loxodonta africana ENSLAFG00000001145 I 0.875
CUX2 Cavia porcellus ENSCPOG00000020483 I 0.878
CUX2 Anolis carolinensis ENSACAG00000002281 I 0.868
cux2b Gasterosteus aculeatus ENSGACG00000013522 I 0.858
cux2b Tetraodon nigroviridis ENSTNIG00000011453 I 0.868
cux2b Takifugu rubripes ENSTRUG00000015853 I 0.868
cux2b Oryzias latipes ENSORLG00000015973 I 0.865
cux2b Danio rerio ENSDARG00000086345 I 0.874
ENSAMEG00000013799 Ailuropoda melanoleuca ENSAMEG00000013799 I 0.879
ENSAMEG00000015392 Ailuropoda melanoleuca ENSAMEG00000015392 I 0.986
ENSAMXG00000006105 Astyanax mexicanus ENSAMXG00000006105 I 0.885
ENSAMXG00000008817 Astyanax mexicanus ENSAMXG00000008817 I 0.900
ENSAPLG00000002588 Anas platyrhynchos ENSAPLG00000002588 I 0.997
ENSAPLG00000004382 Anas platyrhynchos ENSAPLG00000004382 I 0.862
ENSCSAG00000018062 Chlorocebus sabaeus ENSCSAG00000018062 I 0.979
ENSFALG00000009019 Ficedula albicollis ENSFALG00000009019 I 0.878
ENSFALG00000009409 Ficedula albicollis ENSFALG00000009409 I 0.997
ENSGACG00000009915 Gasterosteus aculeatus ENSGACG00000009915 I 0.852
ENSGALG00000001807 Gallus gallus ENSGALG00000001807 I 0.997
ENSGGOG00000016960 Gorilla gorilla ENSGGOG00000016960 I 0.720
ENSGMOG00000008990 Gadus morhua ENSGMOG00000008990 I 0.851
ENSGMOG00000017485 Gadus morhua ENSGMOG00000017485 I 0.851
ENSLACG00000014413 Latimeria chalumnae ENSLACG00000014413 I 0.875
ENSLACG00000017710 Latimeria chalumnae ENSLACG00000017710 I 0.969
ENSLOCG00000001531 Lepisosteus oculatus ENSLOCG00000001531 I 0.948
ENSLOCG00000007417 Lepisosteus oculatus ENSLOCG00000007417 I 0.891
ENSMEUG00000004239 Macropus eugenii ENSMEUG00000004239 I 0.871
ENSMPUG00000002207 Mustela putorius furo ENSMPUG00000002207 I 0.878
ENSNLEG00000000470 Nomascus leucogenys ENSNLEG00000000470 I 0.882
ENSNLEG00000008310 Nomascus leucogenys ENSNLEG00000008310 I 0.979
ENSOARG00000014629 Ovis aries ENSOARG00000014629 I 0.986
ENSOARG00000017879 Ovis aries ENSOARG00000017879 I 0.878
ENSOGAG00000009038 Otolemur garnettii ENSOGAG00000009038 I 0.982
ENSONIG00000003797 Oreochromis niloticus ENSONIG00000003797 I 0.835
ENSONIG00000015972 Oreochromis niloticus ENSONIG00000015972 I 0.862
ENSP00000261726 Macaca fascicularis ENSP00000261726 I 0.882
ENSP00000261726-D1 Bos grunniens ENSP00000261726-D1 I 0.882
ENSP00000353401 Macaca fascicularis ENSP00000353401 I 0.979
ENSP00000353401-D1 Bos grunniens ENSP00000353401-D1 I 0.986
ENSPANG00000016879 Papio anubis ENSPANG00000016879 I 0.979
ENSPFOG00000005210 Poecilia formosa ENSPFOG00000005210 I 0.872
ENSPSIG00000008210 Pelodiscus sinensis ENSPSIG00000008210 I 1.000
ENSSHAG00000007801 Sarcophilus harrisii ENSSHAG00000007801 I 0.993
ENSSHAG00000009458 Sarcophilus harrisii ENSSHAG00000009458 I 0.875
ENSSTOG00000002242 Ictidomys tridecemlineatus ENSSTOG00000002242 I 0.878
ENSSTOG00000010390 Ictidomys tridecemlineatus ENSSTOG00000010390 I 0.972
ENSTNIG00000007722 Tetraodon nigroviridis ENSTNIG00000007722 I 0.838
ENSXMAG00000004131 Xiphophorus maculatus ENSXMAG00000004131 I 0.869
ENSXMAG00000018520 Xiphophorus maculatus ENSXMAG00000018520 I 0.823
Gfo_R003142 Geospiza fortis Gfo_R003142 I 0.883
Gfo_R011360 Geospiza fortis Gfo_R011360 I 0.997
Myotis_brandtii_CUX1_10015212 Myotis brandtii Myotis_brandtii_CUX1_10015212 I 0.969
Myotis_brandtii_CUX2_10011523 Myotis brandtii Myotis_brandtii_CUX2_10011523 I 0.878
Ogr05066 Ophisaurus gracilis Ogr05066 I 0.990
Ogr05872 Ophisaurus gracilis Ogr05872 I 0.860
Pvit_01819 Pogona vitticeps Pvit_01819 I 0.993
Pvit_05599 Pogona vitticeps Pvit_05599 I 0.868
Tal_R013483 Tyto alba Tal_R013483 I 0.986
XP_002942311 Xenopus tropicalis XP_002942311 I 0.972