CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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onecut1
(
Xenopus tropicalis
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
XB-GENE-480152
T167472_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ONECUT1
M02943_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_1
1.000
1.000
ONECUT1
M02944_2.00
Homo sapiens
DDTATYGATTTTHN
NDAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT1_2
1.000
1.000
ONECUT1
M03715_2.00
Homo sapiens
HRATCGATAHH
DDTATCGATYD
SELEX
Nitta et al.(2015)
ONECUT1_1
1.000
1.000
ONECUT1
M04673_2.00
Homo sapiens
NNATCGATYN
NRATCGATNN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_HT-SELEX
1.000
1.000
ONECUT1
M04675_2.00
Homo sapiens
NNCGATCGATAN
NTATCGATCGNN
SELEX
Yin et al.(2017)
ONECUT1_FL_HT-SELEX
1.000
1.000
ONECUT1
M09022_2.00
Homo sapiens
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_HUMAN.H11MO.0.B
1.000
1.000
Onecut1
M09026_2.00
Mus musculus
NBBATTGATYN
NRATCAATVVN
Misc
Kulakovskiy et al.(2013)
HNF6_MOUSE.H11MO.0.A
1.000
1.000
Onecut1
M09520_2.00
Mus musculus
NRATCRATMN
NKATYGATYN
Misc
Heinz et al.(2010)
Liver-Hnf6_ERP000394
1.000
1.000
ONECUT1
M10418_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q4
1.000
1.000
ONECUT1
M10419_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HNF6_Q6_01
1.000
1.000
ONECUT1
M04674_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT1_eDBD_Methyl-HT-SELEX
1.000
1.000
ONECUT1
M04676_2.00
Homo sapiens
RYSRATCAATAM
KTATTGATYSRY
SELEX
Yin et al.(2017)
ONECUT1_FL_Methyl-HT-SELEX
1.000
1.000
ONECUT2
M02942_2.00
Homo sapiens
DDTATYGATTTTYN
NRAAAATCRATAHH
SELEX
Jolma et al.(2013)
ONECUT2_1
0.948
0.948
ONECUT2
M03714_2.00
Homo sapiens
NDDTATCGATYBNN
NNVRATCGATAHHN
SELEX
Nitta et al.(2015)
ONECUT2_1
0.948
0.948
ONECUT2
M04667_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT2_eDBD_HT-SELEX
0.948
0.948
ONECUT2
M04669_2.00
Homo sapiens
NNSGATCGATAH
DTATCGATCSNN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_1
0.948
0.948
ONECUT2
M04670_2.00
Homo sapiens
NKATYGATYDN
NHRATCRATMN
SELEX
Yin et al.(2017)
ONECUT2_FL_HT-SELEX_2
0.948
0.948
ONECUT2
M10417_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$OC2_Q3
0.948
0.948
ONECUT2
M04668_2.00
Homo sapiens
DTATTGATYN
NRATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_eDBD_Methyl-HT-SELEX
0.948
0.948
ONECUT2
M04671_2.00
Homo sapiens
ACSGATCAATAM
KTATTGATCSGT
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_1
0.948
0.948
ONECUT2
M04672_2.00
Homo sapiens
DTATTGATTDN
NHAATCAATAH
SELEX
Yin et al.(2017)
ONECUT2_FL_Methyl-HT-SELEX_2
0.948
0.948
ONECUT3
M02945_2.00
Homo sapiens
DWTATYGATTTTYN
NRAAAATCRATAWH
SELEX
Jolma et al.(2013)
ONECUT3_1
0.918
0.918
ONECUT3
M04677_2.00
Homo sapiens
NNATYGATYN
NRATCRATNN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_HT-SELEX
0.918
0.918
ONECUT3
M04678_2.00
Homo sapiens
NTATTGATYN
NRATCAATAN
SELEX
Yin et al.(2017)
ONECUT3_eDBD_Methyl-HT-SELEX
0.918
0.918
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.881
0.881
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.881
0.881
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.881
0.881
ceh-48
M01905_2.00
Caenorhabditis elegans
NNATYGRNN
NNYCRATNN
PBM
Weirauch et al.(2014)
pTH8982
0.813
0.813
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AAI35776
CUT
281
359
QMEEINTKEVAQRITTELKRYSIPQAIFAQRVLCRSQGTLSDLLRNPKPWSKLKSGRETFRRMWKWLQEPEFQRMSALR
AAI35776
Homeodomain
414
468
KKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRS
Links
Other
CUT,Homeodomain
family TFs
Other
Xenopus tropicalis
TFs
278 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AB08896.1
Alternaria brassicicola
AB08896.1
N
0.000
M378DRAFT_155487
Amanita muscaria
M378DRAFT_155487
I
0.000
M378DRAFT_42891
Amanita muscaria
M378DRAFT_42891
I
0.000
COCC4DRAFT_125132
Bipolaris maydis
COCC4DRAFT_125132
I
0.000
COCMIDRAFT_88977
Bipolaris oryzae
COCMIDRAFT_88977
I
0.000
COCSADRAFT_159051
Bipolaris sorokiniana
COCSADRAFT_159051
I
0.000
BDDG_02246
Blastomyces dermatitidis
BDDG_02246
I
0.000
CaO19.10341
Candida albicans
CaO19.10341
I
0.000
CD36_27640
Candida dubliniensis
CD36_27640
I
0.000
G210_0578
Candida maltosa
G210_0578
I
0.000
CTRG_00834
Candida tropicalis
CTRG_00834
I
0.000
CIMG_12783
Coccidioides immitis
CIMG_12783
I
0.000
CPC735_049570
Coccidioides posadasii
CPC735_049570
I
0.000
L804_03658
Cryptococcus gattii
L804_03658
I
0.000
CNG02110
Cryptococcus neoformans
CNG02110
I
0.000
GALMADRAFT_33159
Galerina marginata
GALMADRAFT_33159
I
0.000
CMQ_1586
Grosmannia clavigera
CMQ_1586
I
0.000
HCBG_03514
Histoplasma capsulatum
HCBG_03514
I
0.000
HCBG_03464
Histoplasma capsulatum
HCBG_03464
I
0.000
HYDPIDRAFT_113320
Hydnomerulius pinastri
HYDPIDRAFT_113320
I
0.000
LEMA_P114390.1
Leptosphaeria maculans
LEMA_P114390.1
I
0.000
MELLADRAFT_111305
Melampsora laricipopulina
MELLADRAFT_111305
I
0.000
E5Q_02264
Mixia osmundae
E5Q_02264
N
0.000
E5Q_00699
Mixia osmundae
E5Q_00699
I
0.000
Moror_1142
Moniliophthora roreri
Moror_1142
N
0.000
Moror_11417
Moniliophthora roreri
Moror_11417
N
0.000
fgeneshMC_pg.3_#_381
Mucor circinelloides
fgeneshMC_pg.3_#_381
N
0.000
fgeneshMC_pg.2_#_1032
Mucor circinelloides
fgeneshMC_pg.2_#_1032
N
0.000
PABG_03121
Paracoccidioides brasiliensis
PABG_03121
I
0.000
PAAG_02636
Paracoccidioides sp lutzii
PAAG_02636
I
0.000
PAXINDRAFT_17515
Paxillus involutus
PAXINDRAFT_17515
I
0.000
PAXRUDRAFT_47613
Paxillus rubicundulus
PAXRUDRAFT_47613
I
0.000
PHACADRAFT_81332
Phanerochaete carnosa
PHACADRAFT_81332
N
0.000
fgenesh1_pg.C_scaffold_15000082
Phanerochaete chrysosporium
fgenesh1_pg.C_scaffold_15000082
N
0.000
fgeneshPB_pg.1__316
Phycomyces blakesleeanus
fgeneshPB_pg.1__316
N
0.000
estExt_fgenesh1_pg.C_chr_3.10092
Pichia stipitis
estExt_fgenesh1_pg.C_chr_3.10092
I
0.000
PIIN_01973
Piriformospora indica
PIIN_01973
I
0.000
PLEOSDRAFT_1016849
Pleurotus ostreatus
PLEOSDRAFT_1016849
N
0.000
PLEOSDRAFT_12123
Pleurotus ostreatus
PLEOSDRAFT_12123
I
0.000
PAN0_018c5621
Pseudozyma antarctica
PAN0_018c5621
N
0.000
PaG_05617
Pseudozyma aphidis
PaG_05617
N
0.000
PSEUBRA_SCAF20g03099
Pseudozyma brasiliensis
PSEUBRA_SCAF20g03099
N
0.000
PTT_09966
Pyrenophora teres
PTT_09966
N
0.000
PTRG_07337
Pyrenophora triticirepentis
PTRG_07337
N
0.000
GLOINDRAFT_29935
Rhizophagus irregularis
GLOINDRAFT_29935
N
0.000
RO3G_10625
Rhizopus oryzae
RO3G_10625
N
0.000
RO3G_03011
Rhizopus oryzae
RO3G_03011
N
0.000
RHTO_01537
Rhodosporidium toruloides
RHTO_01537
N
0.000
PICST_67218
Scheffersomyces stipitis
PICST_67218
I
0.000
SCHCODRAFT_111683
Schizophyllum commune
SCHCODRAFT_111683
N
0.000
SPAPADRAFT_59824
Spathaspora passalidarum
SPAPADRAFT_59824
I
0.000
M422DRAFT_110441
Sphaerobolus stellatus
M422DRAFT_110441
N
0.000
sr16650
Sporisorium reilianum
sr16650
N
0.000
S40285_04294
Stachybotrys chlorohalonata
S40285_04294
N
0.000
CY34DRAFT_56447
Suillus luteus
CY34DRAFT_56447
N
0.000
CY34DRAFT_31998
Suillus luteus
CY34DRAFT_31998
I
0.000
TDEL_0C04960
Torulaspora delbrueckii
TDEL_0C04960
I
0.000
fgeneshTM_pg.8_#_254
Tremella mesenterica
fgeneshTM_pg.8_#_254
I
0.000
UHOR_08562
Ustilago hordei
UHOR_08562
N
0.000
J056_002766
Wallemia ichthyophaga
J056_002766
N
0.000
BN7_1833
Wickerhamomyces ciferrii
BN7_1833
I
0.000