CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MhA1_Contig512.frz3.fgene1
(
Meloidogyne hapla
)
CUT,Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02376 (CUT)
PF00046 (Homeobox)
IPR003350
IPR001356
MhA1_Contig512.frz3.fgene1
T167588_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
onecut
M03716_2.00
Drosophila melanogaster
NNVRATCRATAHNN
NNDTATYGATYBNN
SELEX
Nitta et al.(2015)
onecut_1
0.713
0.713
onecut
M03717_2.00
Drosophila melanogaster
NNTATYGATTWNN
NNWAATCRATANN
SELEX
Nitta et al.(2015)
onecut_2
0.713
0.713
onecut
M06472_2.00
Drosophila melanogaster
HAATCAA
TTGATTD
B1H
Mathelier et al.(2014)
MA0235.1
0.713
0.713
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MhA1_Contig512.frz3.fgene1
CUT
438
516
DEIYIDTKDLCKRVAYELKQHSIPQAIFAERILCRSQGTLSDLLRNPKPWNRLKSGRETFKRMYNWLQQPLNIRLSILD
MhA1_Contig512.frz3.fgene1
Homeodomain
553
609
KRPRLVFTDIQKRTLQAIFKETQRPSREMQQTIAEHLRLDMSTVSNFFMNARRRSRN
Links
Other
CUT,Homeodomain
family TFs
Other
Meloidogyne hapla
TFs
52 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy