Bra002057 (Brassica rapa)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02701 (zf-Dof) IPR003851 Bra002057 T170296_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
CDF2
M01946_2.00 		Arabidopsis thaliana
NHVCTTTWHN
NDWAAAGBDN		 PBM
Weirauch et al.(2014)
pTH7574 		0.697 0.697
CDF3
M01944_2.00 		Arabidopsis thaliana
NHVCTTTWN
NWAAAGBDN		 PBM
Weirauch et al.(2014)
pTH7659 		0.667 0.667
e_gw1.149.93.1
M01951_2.00 		Physcomitrella patens
NCDTTNNN
NNNAAHGN		 PBM
Weirauch et al.(2014)
pTH8463 		0.667 0.667
e_gw1.392.16.1
M01953_2.00 		Physcomitrella patens
NNCTTTWNN
NNWAAAGNN		 PBM
Weirauch et al.(2014)
pTH8686 		0.667 0.667
PK23009.1
M01223_2.00 		Cannabis sativa
NNHVCTTTWN
NWAAAGBDNN		 PBM
Lambert et al.(2019)
pTH10279 		0.667 0.667
CDF3
M06849_2.00 		Arabidopsis thaliana
HWTDYMCTTTTTNNHHHHW
WDDDDNNAAAAAGKRHAWD		 Dap-seq
OMalley et al.(2016)
CDF3_col_a 		0.667 0.667
CDF3
M06850_2.00 		Arabidopsis thaliana
DDYRCTTTTHNNHYTTTN
NAAARDNNDAAAAGYRHH		 Dap-seq
OMalley et al.(2016)
CDF3_colamp_a 		0.667 0.667
gw1.385.26.1
M01956_2.00 		Physcomitrella patens
NNNCKTTWNN
NNWAAMGNNN		 PBM
Weirauch et al.(2014)
pTH8458 		0.636 0.636
DOF1.5
M01938_2.00 		Arabidopsis thaliana
ACKTTWWH
DWWAAMGT		 PBM
Weirauch et al.(2014)
pTH7676 		0.606 0.606
estExt_fgenesh1_pg.C_370003
M01954_2.00 		Physcomitrella patens
NNNNHDNNNN
NNNNHDNNNN		 PBM
Weirauch et al.(2014)
pTH8469 		0.606 0.606
PK16340.1
M01220_2.00 		Cannabis sativa
CKTTWNN
NNWAAMG		 PBM
Lambert et al.(2019)
pTH10129 		0.606 0.606
CDF5
M06837_2.00 		Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH
DDNDWRRDRDAAARDDAAAAGHRMWDD		 Dap-seq
OMalley et al.(2016)
AT1G69570_col_a 		0.606 0.606
CDF5
M06838_2.00 		Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN
NNVDVDDDWAARNNAAAAGBR		 Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a 		0.606 0.606
DOF1.5
M06829_2.00 		Arabidopsis thaliana
HWTDYMCTTTTTNHHHBHHNN
NNDDVDDDNAAAAAGKRHAWD		 Dap-seq
OMalley et al.(2016)
COG1_col_a 		0.606 0.606
DOF1.5
M06830_2.00 		Arabidopsis thaliana
NHWWTDYACTTTTTN
NAAAAAGTRHAWWDN		 Dap-seq
OMalley et al.(2016)
COG1_colamp_a 		0.606 0.606
e_gw1.170.52.1
M01952_2.00 		Physcomitrella patens
NNNCTTTHNN
NNDAAAGNNN		 PBM
Weirauch et al.(2014)
pTH8464 		0.545 0.545
gw1.12.257.1
M01955_2.00 		Physcomitrella patens
NNDDNNN
NNNHHNN		 PBM
Weirauch et al.(2014)
pTH8651 		0.545 0.545
DOF1.8
M01939_2.00 		Arabidopsis thaliana
NNNCKTTHNN
NNDAAMGNNN		 PBM
Weirauch et al.(2014)
pTH7256 		0.515 0.515
DOF1.8
M01062_2.00 		Arabidopsis thaliana
NHVCTTTWH
DWAAAGBDN		 PBM
Sullivan et al.(2014)
pTH7653 		0.515 0.515
PK05671.1
M01215_2.00 		Cannabis sativa
NCDWWNNN
NNNWWHGN		 PBM
Lambert et al.(2019)
pTH10101 		0.515 0.515
PK07031.1
M01216_2.00 		Cannabis sativa
NCKTTHN
NDAAMGN		 PBM
Lambert et al.(2019)
pTH11435 		0.515 0.515
DOF1.8
M06835_2.00 		Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW
WDNDNNNAAAAAGKDRWWW		 Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b 		0.515 0.515
DOF1.8
M06836_2.00 		Arabidopsis thaliana
NHHMCTTTTTN
NAAAAAGKDDN		 Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a 		0.515 0.515
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra002057.1-P Dof 208 240

Links

Other Dof family TFs
Other Brassica rapa TFs

146 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo1g059040 Brassica oleracea Bo1g059040 I 0.939
BRADI3G25670 Brachypodium distachyon BRADI3G25670 I 0.727
30138.m004065 Ricinus communis 30138.m004065 I 0.697
mgf001156m Mimulus guttatus mgf001156m I 0.697
GLYMA07G35690 Glycine max GLYMA07G35690 I 0.697
GLYMA02G12081 Glycine max GLYMA02G12081 I 0.697
Ciclev10019949m.g Citrus clementina Ciclev10019949m.g I 0.697
evm.TU.supercontig_111.11 Carica papaya evm.TU.supercontig_111.11 I 0.697
orange1.1g011752m.g Citrus sinensis orange1.1g011752m.g I 0.697
Ca_16372 Cicer arietinum Ca_16372 I 0.697
MTR_3g435480 Medicago truncatula MTR_3g435480 I 0.697
LjSGA_048454.1 Lotus japonicus LjSGA_048454.1 I 0.697
orange1.1g011169m.g Citrus sinensis orange1.1g011169m.g I 0.667
Eucgr.K02480 Eucalyptus grandis Eucgr.K02480 I 0.667
MLOC_56598 Hordeum vulgare MLOC_56598 I 0.667
GSMUA_Achr10G18770_001 Musa acuminata GSMUA_Achr10G18770_001 I 0.667
evm.TU.supercontig_161.44 Carica papaya evm.TU.supercontig_161.44 I 0.667
Pavir.J12332 Panicum virgatum Pavir.J12332 I 0.667
Pavir.Ib03509 Panicum virgatum Pavir.Ib03509 I 0.667
SapurV1A.0753s0070 Salix purpurea SapurV1A.0753s0070 I 0.667
SELMODRAFT_448037 Selaginella moellendorffii SELMODRAFT_448037 I 0.667
Si035787m.g Setaria italica Si035787m.g I 0.667
BRADI2G09720 Brachypodium distachyon BRADI2G09720 I 0.667
e_gw1.149.93.1 Physcomitrella patens e_gw1.149.93.1 D 0.667
PDK_20s1700671g001 Phoenix dactylifera PDK_20s1700671g001 I 0.667
POPTR_0013s06290 Populus trichocarpa POPTR_0013s06290 I 0.667
Bo3g134590 Brassica oleracea Bo3g134590 I 0.636
Bo2g164130 Brassica oleracea Bo2g164130 I 0.636
Bostr.0568s0564 Boechera stricta Bostr.0568s0564 I 0.636
mgf008152m Mimulus guttatus mgf008152m I 0.636
mgf017222m Mimulus guttatus mgf017222m I 0.636
TCM_011692 Theobroma cacao TCM_011692 I 0.636
Bra018141 Brassica rapa Bra018141 I 0.636
OLONG_012250 Oryza longistaminata OLONG_012250 I 0.633
Gorai.010G159300 Gossypium raimondii Gorai.010G159300 I 0.606
Bostr.23794s0692 Boechera stricta Bostr.23794s0692 I 0.606
Cagra.4003s0032 Capsella grandiflora Cagra.4003s0032 I 0.606
Carubv10026854m.g Capsella rubella Carubv10026854m.g I 0.606
POPTR_0011s07400 Populus trichocarpa POPTR_0011s07400 I 0.606
OB01G21320 Oryza brachyantha OB01G21320 I 0.606
SapurV1A.1350s0040 Salix purpurea SapurV1A.1350s0040 I 0.606
GSMUA_Achr3G01850_001 Musa acuminata GSMUA_Achr3G01850_001 I 0.606
GLYMA15G08860 Glycine max GLYMA15G08860 I 0.606
Bo4g182410 Brassica oleracea Bo4g182410 I 0.606
Bra004396 Brassica rapa Bra004396 I 0.606
LjSGA_013019.1 Lotus japonicus LjSGA_013019.1 I 0.606
CDF5 Arabidopsis thaliana AT1G69570 D 0.606
CDF4 Arabidopsis thaliana AT2G34140 I 0.576
Bra030124 Brassica rapa Bra030124 I 0.576
Bra010848 Brassica rapa Bra010848 I 0.576
Carubv10024615m.g Capsella rubella Carubv10024615m.g I 0.576
Thhalv10017316m.g Eutrema salsugineum Thhalv10017316m.g I 0.576
OGLUM01G35670 Oryza glumaepatula OGLUM01G35670 I 0.576
Cla009852 Citrullus lanatus Cla009852 I 0.545
Cla020007 Citrullus lanatus Cla020007 I 0.545
PGSC0003DMG400000120 Solanum tuberosum PGSC0003DMG400000120 I 0.545
F775_09091 Aegilops tauschii F775_09091 I 0.545
Traes_3DS_72524290F Triticum aestivum Traes_3DS_72524290F I 0.545
Traes_3AS_1DEBF1E8B Triticum aestivum Traes_3AS_1DEBF1E8B I 0.545
GLYMA15G29870 Glycine max GLYMA15G29870 I 0.545
MLOC_79421 Hordeum vulgare MLOC_79421 I 0.545
TRIUR3_22971 Triticum urartu TRIUR3_22971 I 0.545
29813.m001503 Ricinus communis 29813.m001503 I 0.537
SapurV1A.0012s0460 Salix purpurea SapurV1A.0012s0460 I 0.519
Traes_6DL_EF6D5D4FA Triticum aestivum Traes_6DL_EF6D5D4FA I 0.515
Lus10035955.g Linum usitatissimum Lus10035955.g I 0.515
Ca_09238 Cicer arietinum Ca_09238 I 0.515
MDP0000183534 Malus domestica MDP0000183534 I 0.515
Traes_6AL_065306054 Triticum aestivum Traes_6AL_065306054 I 0.515
Pavir.Ib03857 Panicum virgatum Pavir.Ib03857 I 0.515
TCM_029918 Theobroma cacao TCM_029918 I 0.515
Traes_2BS_C94BD2E9F Triticum aestivum Traes_2BS_C94BD2E9F I 0.515
Pavir.J38170 Panicum virgatum Pavir.J38170 I 0.515
Pavir.J13587 Panicum virgatum Pavir.J13587 I 0.515
Aquca_015_00212 Aquilegia coerulea Aquca_015_00212 I 0.515
Cla014311 Citrullus lanatus Cla014311 I 0.515
Cucsa.172400 Cucumis sativus Cucsa.172400 I 0.515
mgf012457m Mimulus guttatus mgf012457m I 0.515
Gorai.008G126800 Gossypium raimondii Gorai.008G126800 I 0.515
estExt_fgenesh4_pg.C_850048 Volvox carteri estExt_fgenesh4_pg.C_850048 I 0.515
gene18689-v1.0-hybrid Fragaria vesca gene18689-v1.0-hybrid I 0.515
Eucgr.E03261 Eucalyptus grandis Eucgr.E03261 I 0.515
Pm018337 Prunus mume Pm018337 I 0.515
PK07031.1 Cannabis sativa PK07031.1 D 0.515
Gorai.009G168300 Gossypium raimondii Gorai.009G168300 I 0.515
Pavir.Ga01003 Panicum virgatum Pavir.Ga01003 I 0.515
mgf012900m Mimulus guttatus mgf012900m I 0.515
Lus10025707.g Linum usitatissimum Lus10025707.g I 0.515
PGSC0003DMG400007506 Solanum tuberosum PGSC0003DMG400007506 I 0.515
MLOC_21982 Hordeum vulgare MLOC_21982 I 0.515
MLOC_73724 Hordeum vulgare MLOC_73724 I 0.515
LPERR07G13200 Leersia perrieri LPERR07G13200 I 0.515
LPERR04G17990 Leersia perrieri LPERR04G17990 I 0.515
LPERR02G22470 Leersia perrieri LPERR02G22470 I 0.515
LPERR03G20320 Leersia perrieri LPERR03G20320 I 0.515
OBART02G27590 Oryza barthii OBART02G27590 I 0.515
OGLUM02G28130 Oryza glumaepatula OGLUM02G28130 I 0.515
OMERI02G26850 Oryza meridionalis OMERI02G26850 I 0.515
OMERI03G22410 Oryza meridionalis OMERI03G22410 I 0.515
OGLUM07G15440 Oryza glumaepatula OGLUM07G15440 I 0.515
OGLUM04G22040 Oryza glumaepatula OGLUM04G22040 I 0.515
OGLUM03G25260 Oryza glumaepatula OGLUM03G25260 I 0.515
GSMUA_Achr8G15860_001 Musa acuminata GSMUA_Achr8G15860_001 I 0.515
GSMUA_Achr4G30470_001 Musa acuminata GSMUA_Achr4G30470_001 I 0.515
BGIOSGA014530 Oryza indica BGIOSGA014530 I 0.515
BRADI1G26570 Brachypodium distachyon BRADI1G26570 I 0.515
BGIOSGA013026 Oryza indica BGIOSGA013026 I 0.515
BGIOSGA005855 Oryza indica BGIOSGA005855 I 0.515
AMTR_s00021p00057700 Amborella trichopoda AMTR_s00021p00057700 I 0.515
BRADI3G52880 Brachypodium distachyon BRADI3G52880 I 0.515
BRADI5G18640 Brachypodium distachyon BRADI5G18640 I 0.515
GRMZM2G134545 Zea mays GRMZM2G134545 I 0.515
GRMZM2G171852 Zea mays GRMZM2G171852 I 0.515
GRMZM2G114998 Zea mays GRMZM2G114998 I 0.515
GRMZM2G064655 Zea mays GRMZM2G064655 I 0.515
F775_14981 Aegilops tauschii F775_14981 I 0.515
OMERI04G18510 Oryza meridionalis OMERI04G18510 I 0.515
OMERI07G12560 Oryza meridionalis OMERI07G12560 I 0.515
Sb01g015610 Sorghum bicolor Sb01g015610 I 0.515
Sb02g034320 Sorghum bicolor Sb02g034320 I 0.515
PRUPE_ppa010132mg Prunus persica PRUPE_ppa010132mg I 0.515
AMTR_s00006p00248860 Amborella trichopoda AMTR_s00006p00248860 I 0.515
OS02G0673700 Oryza sativa OS02G0673700 I 0.515
OS04G0567800 Oryza sativa OS04G0567800 I 0.515
Sb04g032040 Sorghum bicolor Sb04g032040 I 0.515
Sb06g025680 Sorghum bicolor Sb06g025680 I 0.515
Si036311m.g Setaria italica Si036311m.g I 0.515
Solyc06g075370.2 Solanum lycopersicum Solyc06g075370.2 I 0.515
Si017619m.g Setaria italica Si017619m.g I 0.515
Si010443m.g Setaria italica Si010443m.g I 0.515
Sb08g000330 Sorghum bicolor Sb08g000330 I 0.515
ORUFI04G23630 Oryza rufipogon ORUFI04G23630 I 0.515
ORUFI03G25110 Oryza rufipogon ORUFI03G25110 I 0.515
ONIVA07G15480 Oryza nivara ONIVA07G15480 I 0.515
OPUNC02G25290 Oryza punctata OPUNC02G25290 I 0.515
ONIVA04G20570 Oryza nivara ONIVA04G20570 I 0.515
ONIVA03G26020 Oryza nivara ONIVA03G26020 I 0.515
ONIVA02G30480 Oryza nivara ONIVA02G30480 I 0.515
OPUNC03G22610 Oryza punctata OPUNC03G22610 I 0.515
OPUNC04G19770 Oryza punctata OPUNC04G19770 I 0.515
ORGLA07G0128800 Oryza glaberrima ORGLA07G0128800 I 0.515
ORUFI02G29040 Oryza rufipogon ORUFI02G29040 I 0.515
ORGLA04G0190600 Oryza glaberrima ORGLA04G0190600 I 0.515
ORGLA03G0227600 Oryza glaberrima ORGLA03G0227600 I 0.515
OPUNC07G14510 Oryza punctata OPUNC07G14510 I 0.515
TCM_005109 Theobroma cacao TCM_005109 I 0.515