CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra002057
(
Brassica rapa
)
Dof
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02701 (zf-Dof)
IPR003851
Bra002057
T170296_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
CDF2
M01946_2.00
Arabidopsis thaliana
NHVCTTTWHN
NDWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7574
0.697
0.697
CDF3
M01944_2.00
Arabidopsis thaliana
NHVCTTTWN
NWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7659
0.667
0.667
e_gw1.149.93.1
M01951_2.00
Physcomitrella patens
NCDTTNNN
NNNAAHGN
PBM
Weirauch et al.(2014)
pTH8463
0.667
0.667
e_gw1.392.16.1
M01953_2.00
Physcomitrella patens
NNCTTTWNN
NNWAAAGNN
PBM
Weirauch et al.(2014)
pTH8686
0.667
0.667
PK23009.1
M01223_2.00
Cannabis sativa
NNHVCTTTWN
NWAAAGBDNN
PBM
Lambert et al.(2019)
pTH10279
0.667
0.667
CDF3
M06849_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNNHHHHW
WDDDDNNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
CDF3_col_a
0.667
0.667
CDF3
M06850_2.00
Arabidopsis thaliana
DDYRCTTTTHNNHYTTTN
NAAARDNNDAAAAGYRHH
Dap-seq
OMalley et al.(2016)
CDF3_colamp_a
0.667
0.667
gw1.385.26.1
M01956_2.00
Physcomitrella patens
NNNCKTTWNN
NNWAAMGNNN
PBM
Weirauch et al.(2014)
pTH8458
0.636
0.636
DOF1.5
M01938_2.00
Arabidopsis thaliana
ACKTTWWH
DWWAAMGT
PBM
Weirauch et al.(2014)
pTH7676
0.606
0.606
estExt_fgenesh1_pg.C_370003
M01954_2.00
Physcomitrella patens
NNNNHDNNNN
NNNNHDNNNN
PBM
Weirauch et al.(2014)
pTH8469
0.606
0.606
PK16340.1
M01220_2.00
Cannabis sativa
CKTTWNN
NNWAAMG
PBM
Lambert et al.(2019)
pTH10129
0.606
0.606
CDF5
M06837_2.00
Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH
DDNDWRRDRDAAARDDAAAAGHRMWDD
Dap-seq
OMalley et al.(2016)
AT1G69570_col_a
0.606
0.606
CDF5
M06838_2.00
Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN
NNVDVDDDWAARNNAAAAGBR
Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a
0.606
0.606
DOF1.5
M06829_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNHHHBHHNN
NNDDVDDDNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
COG1_col_a
0.606
0.606
DOF1.5
M06830_2.00
Arabidopsis thaliana
NHWWTDYACTTTTTN
NAAAAAGTRHAWWDN
Dap-seq
OMalley et al.(2016)
COG1_colamp_a
0.606
0.606
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN
NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.545
0.545
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN
NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.545
0.545
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN
NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.515
0.515
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH
DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.515
0.515
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN
NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.515
0.515
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN
NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.515
0.515
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW
WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.515
0.515
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN
NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.515
0.515
For this family, TFs with SR scores >
0.508
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra002057.1-P
Dof
208
240
LQLVCKKCQRYWTAGGKMRYVLVGAGRHKNKNL
Links
Other
Dof
family TFs
Other
Brassica rapa
TFs
146 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy