Bra038790 (Brassica rapa)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02701 (zf-Dof) IPR003851 Bra038790 T170365_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN

NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.579 0.579
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH

DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.579 0.579
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW

WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.579 0.579
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN

NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.579 0.579
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN

NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.561 0.561
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN

NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.561 0.561
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN

NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.561 0.561
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN

NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.561 0.561
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.561 0.561
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN

NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.561 0.561
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB

VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.561 0.561
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN

NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.561 0.561
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN

NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.561 0.561
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN

NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.544 0.544
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT

AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.544 0.544
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW

WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.544 0.544
DOF4.5
M06859_2.00
Arabidopsis thaliana
AAAKYHDCTTTWTN

NAWAAAGHDRMTTT
Dap-seq
OMalley et al.(2016)
dof45_col_a
0.544 0.544
DOF4.5
M06860_2.00
Arabidopsis thaliana
WAAAGYYDCTTTWDN

NHWAAAGHRRCTTTW
Dap-seq
OMalley et al.(2016)
dof45_colamp_a
0.544 0.544
PBF
M02675_2.00
Zea mays
RCTTT

AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.544 0.544
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD

HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.544 0.544
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.544 0.544
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN

NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.526 0.526
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN

NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.526 0.526
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN

NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.526 0.526
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN

NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
0.526 0.526
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN

NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
0.526 0.526
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN

NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.526 0.526
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN

NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.526 0.526
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.526 0.526
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN

NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.526 0.526
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN

NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.526 0.526
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN

NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.526 0.526
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN

NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.526 0.526
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.526 0.526
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN

NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.526 0.526
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN

NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.526 0.526
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW

WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.526 0.526
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN

NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.526 0.526
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN

NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.526 0.526
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH

DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
0.526 0.526
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN

NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.526 0.526
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN

NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.526 0.526
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH

DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.526 0.526
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN

NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.526 0.526
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN

NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.526 0.526
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH

DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.526 0.526
Dof3
M02676_2.00
Zea mays
BRCTTT

AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.526 0.526
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN

NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.526 0.526
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN

NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.509 0.509
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN

NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.509 0.509
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH

DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.509 0.509
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN

NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.509 0.509
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH

DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.509 0.509
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra038790.1-P Dof 10 67

Links

Other Dof family TFs
Other Brassica rapa TFs

939 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB001858 Anopheles albimanus AALB001858 N 0.000
AATE017421 Anopheles atroparvus AATE017421 N 0.000
ACOM030335 Anopheles coluzzii ACOM030335 N 0.000
ACUA024844 Anopheles culicifacies ACUA024844 N 0.000
AEPI005595 Anopheles epiroticus AEPI005595 N 0.000
AFAF010288 Anopheles farauti AFAF010288 N 0.000
AFUN010912 Anopheles funestus AFUN010912 N 0.000
AMAM004030 Anopheles maculatus AMAM004030 N 0.000
AMAM020217 Anopheles maculatus AMAM020217 N 0.000
AMEC009773 Anopheles melas AMEC009773 N 0.000
AMEC022025 Anopheles melas AMEC022025 N 0.000
AMEM000800 Anopheles merus AMEM000800 N 0.000
AMIN006061 Anopheles minimus AMIN006061 N 0.000
AQUA010548 Anopheles quadriannulatus AQUA010548 N 0.000
ASTEI03049 Anopheles stephensi ASTEI03049 N 0.000
BGIBMGA008808 Bombyx mori BGIBMGA008808 N 0.000
CLEC006353 Cimex lectularius CLEC006353 N 0.000
CLEC007980 Cimex lectularius CLEC007980 N 0.000
Cmyd_10010227 Chelonia mydas Cmyd_10010227 N 0.000
CPIJ017142 Culex quinquefasciatus CPIJ017142 N 0.000
CpipJ_CPIJ017142 Culex pipiens CpipJ_CPIJ017142 N 0.000
D915_05220 Fasciola hepatica D915_05220 N 0.000
DAPPUDRAFT_119144 Daphnia pulex DAPPUDRAFT_119144 N 0.000
DAPPUDRAFT_250798 Daphnia pulex DAPPUDRAFT_250798 N 0.000
DILT_0000261401 Diphyllobothrium latum DILT_0000261401 N 0.000
ENSAPLG00000000834 Anas platyrhynchos ENSAPLG00000000834 N 0.000
ENSDNOG00000012011 Dasypus novemcinctus ENSDNOG00000012011 N 0.000
OSR2 Homo sapiens ENSG00000164920 D 0.000
OSR1 Ochotona princeps ENSOPRG00000009463 N 0.000
HMEL007222 Heliconius melpomene HMEL007222 N 0.000
Hsal_05245--XP_393879.3_APIME Harpegnathos saltator Hsal_05245--XP_393879.3_APIME N 0.000
Hsal_05247--XP_393879.3_APIME Harpegnathos saltator Hsal_05247--XP_393879.3_APIME N 0.000
Hsal_05248--XP_393879.3_APIME Harpegnathos saltator Hsal_05248--XP_393879.3_APIME N 0.000
KGM_21211 Danaus plexippus KGM_21211 N 0.000
L892_g14369 Steinernema scapterisci L892_g14369 N 0.000
LDEC020260 Leptinotarsa decemlineata LDEC020260 N 0.000
MESCA005459 Megaselia scalaris MESCA005459 N 0.000
PPAI007180 Phlebotomus papatasi PPAI007180 N 0.000
PPAI007184 Phlebotomus papatasi PPAI007184 N 0.000
RPRC010841 Rhodnius prolixus RPRC010841 N 0.000
SMAR005253 Strigamia maritima SMAR005253 N 0.000
SMU15031758 Schmidtea mediterranea SMU15031758 N 0.000
SNAPOd2T00004484001 Oikopleura dioica SNAPOd2T00004484001 N 0.000
SPER_0001547901 Spirometra erinaceieuropaei SPER_0001547901 N 0.000
SPER_0001845401 Spirometra erinaceieuropaei SPER_0001845401 N 0.000
SPER_0002767601 Spirometra erinaceieuropaei SPER_0002767601 N 0.000
TCLT_0000345101 Thelazia callipaeda TCLT_0000345101 N 0.000
TCNE_0001446701 Toxocara canis TCNE_0001446701 N 0.000
TRE_0001100701 Trichobilharzia regenti TRE_0001100701 N 0.000
WUBG_17847 Wuchereria bancrofti WUBG_17847 N 0.000
YQE_05715 Dendroctonus ponderosae YQE_05715 N 0.000