CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bra038790
(
Brassica rapa
)
Dof
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02701 (zf-Dof)
IPR003851
Bra038790
T170365_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN
NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.579
0.579
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH
DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.579
0.579
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW
WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.579
0.579
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN
NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.579
0.579
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN
NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.561
0.561
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN
NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.561
0.561
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN
NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.561
0.561
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN
NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.561
0.561
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.561
0.561
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN
NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.561
0.561
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB
VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.561
0.561
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN
NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.561
0.561
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN
NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.561
0.561
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN
NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.544
0.544
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT
AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.544
0.544
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW
WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.544
0.544
DOF4.5
M06859_2.00
Arabidopsis thaliana
AAAKYHDCTTTWTN
NAWAAAGHDRMTTT
Dap-seq
OMalley et al.(2016)
dof45_col_a
0.544
0.544
DOF4.5
M06860_2.00
Arabidopsis thaliana
WAAAGYYDCTTTWDN
NHWAAAGHRRCTTTW
Dap-seq
OMalley et al.(2016)
dof45_colamp_a
0.544
0.544
PBF
M02675_2.00
Zea mays
RCTTT
AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.544
0.544
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD
HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.544
0.544
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.544
0.544
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN
NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.526
0.526
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN
NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.526
0.526
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN
NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.526
0.526
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN
NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
0.526
0.526
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN
NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
0.526
0.526
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN
NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.526
0.526
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN
NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.526
0.526
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.526
0.526
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN
NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.526
0.526
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN
NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.526
0.526
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN
NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.526
0.526
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN
NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.526
0.526
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN
NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.526
0.526
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN
NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.526
0.526
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN
NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.526
0.526
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW
WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.526
0.526
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN
NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.526
0.526
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN
NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.526
0.526
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH
DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
0.526
0.526
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN
NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.526
0.526
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN
NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.526
0.526
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH
DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.526
0.526
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN
NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.526
0.526
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN
NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.526
0.526
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH
DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.526
0.526
Dof3
M02676_2.00
Zea mays
BRCTTT
AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.526
0.526
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN
NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.526
0.526
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN
NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.509
0.509
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN
NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.509
0.509
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH
DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.509
0.509
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN
NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.509
0.509
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH
DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.509
0.509
For this family, TFs with SR scores >
0.508
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bra038790.1-P
Dof
10
67
PSRRMCRRCNSDNTKFCYFVNSSQPRYTCRYCRRSWIYRWALRNIPMGGERGRKTKRQ
Links
Other
Dof
family TFs
Other
Brassica rapa
TFs
939 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy