OBART10G14440 (Oryza barthii)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02701 (zf-Dof) IPR003851 OBART10G14440 T170749_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN

NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.724 0.724
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN

NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.707 0.707
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN

NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.707 0.707
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW

WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.707 0.707
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN

NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.690 0.690
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN

NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.690 0.690
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN

NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.690 0.690
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN

NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.690 0.690
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.690 0.690
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN

NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.690 0.690
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN

NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.690 0.690
PBF
M02675_2.00
Zea mays
RCTTT

AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.690 0.690
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD

HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.690 0.690
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN

NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.672 0.672
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH

DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.672 0.672
DOF1.6
M06831_2.00
Arabidopsis thaliana
HYACTTTWNNN

NNNWAAAGTRD
Dap-seq
OMalley et al.(2016)
AT1G47655_col_a
0.672 0.672
DOF1.6
M06832_2.00
Arabidopsis thaliana
YYYTTDNCTTTWYBN

NVRWAAAGNHAARRR
Dap-seq
OMalley et al.(2016)
AT1G47655_colamp_a
0.672 0.672
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW

WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.672 0.672
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN

NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.672 0.672
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN

NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.672 0.672
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN

NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.672 0.672
DOF3.4
M06851_2.00
Arabidopsis thaliana
NNNHYHYHHHWYYHNCTTTWB

VWAAAGNDRRWDDDRDRDNNN
Dap-seq
OMalley et al.(2016)
OBP1_col_a
0.672 0.672
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.672 0.672
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN

NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
0.655 0.655
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN

NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
0.655 0.655
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN

NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.655 0.655
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN

NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.655 0.655
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN

NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.655 0.655
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH

DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.655 0.655
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH

DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
0.655 0.655
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH

DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.655 0.655
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN

NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.655 0.655
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN

NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.638 0.638
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN

NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.638 0.638
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN

NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.638 0.638
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.638 0.638
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN

NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.638 0.638
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN

NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.638 0.638
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.638 0.638
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN

NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.638 0.638
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN

NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.638 0.638
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT

AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.638 0.638
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW

WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.638 0.638
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN

NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.638 0.638
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH

DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.638 0.638
Dof2
M02674_2.00
Zea mays
NGCTTT

AAAGCN
SELEX
Mathelier et al.(2014)
MA0020.1
0.638 0.638
Dof3
M02676_2.00
Zea mays
BRCTTT

AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.638 0.638
Dof2
M10436_2.00
Zea mays
NNDCTTTWNND

HNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF2_01
0.638 0.638
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN

NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.638 0.638
Dof2
M10437_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DOF_Q2
0.638 0.638
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN

NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.621 0.621
DOF4.7
M01945_2.00
Arabidopsis thaliana
NCKTTHNNN

NNNDAAMGN
PBM
Weirauch et al.(2014)
pTH7189
0.621 0.621
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN

NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.621 0.621
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN

NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.621 0.621
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN

NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.621 0.621
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB

VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.621 0.621
DOF4.7
M06861_2.00
Arabidopsis thaliana
HHHHYHHHNHHHHHHHWWTWWCTTTTTN

NAAAAAGWWAWWDDDDDDDNDDDRDDDD
Dap-seq
OMalley et al.(2016)
At4g38000_col_a
0.621 0.621
DOF4.7
M06862_2.00
Arabidopsis thaliana
NYWACTTTWTB

VAWAAAGTWRN
Dap-seq
OMalley et al.(2016)
At4g38000_colamp_a
0.621 0.621
DOF5.8
M06868_2.00
Arabidopsis thaliana
HHNHHYHHHHYTTTHNCTTTTKNNHHNHW

WDNDDNNMAAAAGNDAAARDDDDRDDNDD
Dap-seq
OMalley et al.(2016)
AT5G66940_col_a
0.621 0.621
DOF5.8
M06869_2.00
Arabidopsis thaliana
NNHNDYWRCTTTTTNNHYHNH

DNDRDNNAAAAAGYWRHNDNN
Dap-seq
OMalley et al.(2016)
AT5G66940_colamp_a
0.621 0.621
DOF3.1
M01942_2.00
Arabidopsis thaliana
NCKTTNNN

NNNAAMGN
PBM
Weirauch et al.(2014)
pTH8190
0.603 0.603
CDF3
M01944_2.00
Arabidopsis thaliana
NHVCTTTWN

NWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7659
0.603 0.603
estExt_fgenesh1_pg.C_370003
M01954_2.00
Physcomitrella patens
NNNNHDNNNN

NNNNHDNNNN
PBM
Weirauch et al.(2014)
pTH8469
0.603 0.603
gw1.385.26.1
M01956_2.00
Physcomitrella patens
NNNCKTTWNN

NNWAAMGNNN
PBM
Weirauch et al.(2014)
pTH8458
0.603 0.603
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN

NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.603 0.603
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH

DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.603 0.603
CDF5
M06837_2.00
Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH

DDNDWRRDRDAAARDDAAAAGHRMWDD
Dap-seq
OMalley et al.(2016)
AT1G69570_col_a
0.603 0.603
CDF5
M06838_2.00
Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN

NNVDVDDDWAARNNAAAAGBR
Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a
0.603 0.603
CDF3
M06849_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNNHHHHW

WDDDDNNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
CDF3_col_a
0.603 0.603
CDF3
M06850_2.00
Arabidopsis thaliana
DDYRCTTTTHNNHYTTTN

NAAARDNNDAAAAGYRHH
Dap-seq
OMalley et al.(2016)
CDF3_colamp_a
0.603 0.603
DOF4.5
M06859_2.00
Arabidopsis thaliana
AAAKYHDCTTTWTN

NAWAAAGHDRMTTT
Dap-seq
OMalley et al.(2016)
dof45_col_a
0.603 0.603
DOF4.5
M06860_2.00
Arabidopsis thaliana
WAAAGYYDCTTTWDN

NHWAAAGHRRCTTTW
Dap-seq
OMalley et al.(2016)
dof45_colamp_a
0.603 0.603
MNB1A
M02677_2.00
Zea mays
DCTTT

AAAGH
SELEX
Mathelier et al.(2014)
MA0053.1
0.603 0.603
MNB1A
M10440_2.00
Zea mays
NNDCTTTWNNN

NNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF1_01
0.603 0.603
DOF1.5
M01938_2.00
Arabidopsis thaliana
ACKTTWWH

DWWAAMGT
PBM
Weirauch et al.(2014)
pTH7676
0.586 0.586
CDF2
M01946_2.00
Arabidopsis thaliana
NHVCTTTWHN

NDWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7574
0.586 0.586
e_gw1.149.93.1
M01951_2.00
Physcomitrella patens
NCDTTNNN

NNNAAHGN
PBM
Weirauch et al.(2014)
pTH8463
0.586 0.586
e_gw1.392.16.1
M01953_2.00
Physcomitrella patens
NNCTTTWNN

NNWAAAGNN
PBM
Weirauch et al.(2014)
pTH8686
0.586 0.586
DOF1.5
M06829_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNHHHBHHNN

NNDDVDDDNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
COG1_col_a
0.586 0.586
DOF1.5
M06830_2.00
Arabidopsis thaliana
NHWWTDYACTTTTTN

NAAAAAGTRHAWWDN
Dap-seq
OMalley et al.(2016)
COG1_colamp_a
0.586 0.586
PK16340.1
M01220_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH10129
0.569 0.569
PK23009.1
M01223_2.00
Cannabis sativa
NNHVCTTTWN

NWAAAGBDNN
PBM
Lambert et al.(2019)
pTH10279
0.534 0.534
DOF4.2
M06856_2.00
Arabidopsis thaliana
NNHWWWRCCTTTTTNNHNH

DNDNNAAAAAGGYWWWDNN
Dap-seq
OMalley et al.(2016)
dof42_col_a
0.534 0.534
fgenesh1_pg.C_Chr_08.0001000114
M01957_2.00
Ostreococcus tauri
NCKWWNNN

NNNWWMGN
PBM
Weirauch et al.(2014)
pTH9431
0.517 0.517
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART10G14440.1 Dof 102 159

Links

Other Dof family TFs
Other Oryza barthii TFs

1960 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
evm.TU.supercontig_12.68 Carica papaya evm.TU.supercontig_12.68 I 0.000
Ca_20521 Cicer arietinum Ca_20521 N 0.000
gene01438-v1.0-hybrid Fragaria vesca gene01438-v1.0-hybrid N 0.000
GLYMA04G12530 Glycine max GLYMA04G12530 N 0.000
GLYMA06G48010 Glycine max GLYMA06G48010 N 0.000
chr3.CM0047.510.nc Lotus japonicus chr3.CM0047.510.nc N 0.000
MDP0000257366 Malus domestica MDP0000257366 I 0.000
Pm000293 Prunus mume Pm000293 N 0.000
PRUPE_ppa008470mg Prunus persica PRUPE_ppa008470mg N 0.000
Solyc12g016190.1 Solanum lycopersicum Solyc12g016190.1 N 0.000