CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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SELMODRAFT_19632
(
Selaginella moellendorffii
)
Dof
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF02701 (zf-Dof)
IPR003851
SELMODRAFT_19632
T171108_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DOF3.1
M01942_2.00
Arabidopsis thaliana
NCKTTNNN
NNNAAMGN
PBM
Weirauch et al.(2014)
pTH8190
0.583
0.583
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN
NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.583
0.583
DOF1.6
M06831_2.00
Arabidopsis thaliana
HYACTTTWNNN
NNNWAAAGTRD
Dap-seq
OMalley et al.(2016)
AT1G47655_col_a
0.583
0.583
DOF1.6
M06832_2.00
Arabidopsis thaliana
YYYTTDNCTTTWYBN
NVRWAAAGNHAARRR
Dap-seq
OMalley et al.(2016)
AT1G47655_colamp_a
0.583
0.583
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN
NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.583
0.583
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB
VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.583
0.583
Dof2
M02674_2.00
Zea mays
NGCTTT
AAAGCN
SELEX
Mathelier et al.(2014)
MA0020.1
0.583
0.583
MNB1A
M02677_2.00
Zea mays
DCTTT
AAAGH
SELEX
Mathelier et al.(2014)
MA0053.1
0.583
0.583
MNB1A
M10440_2.00
Zea mays
NNDCTTTWNNN
NNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF1_01
0.583
0.583
Dof2
M10436_2.00
Zea mays
NNDCTTTWNND
HNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF2_01
0.583
0.583
Dof2
M10437_2.00
Zea mays
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DOF_Q2
0.583
0.583
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN
NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.562
0.562
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN
NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
0.562
0.562
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN
NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
0.562
0.562
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN
NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.562
0.562
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN
NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.562
0.562
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW
WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.562
0.562
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH
DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
0.562
0.562
PBF
M02675_2.00
Zea mays
RCTTT
AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.562
0.562
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD
HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.562
0.562
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.562
0.562
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN
NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.542
0.542
DOF4.7
M01945_2.00
Arabidopsis thaliana
NCKTTHNNN
NNNDAAMGN
PBM
Weirauch et al.(2014)
pTH7189
0.542
0.542
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN
NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.542
0.542
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN
NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.542
0.542
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN
NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.542
0.542
estExt_fgenesh1_pg.C_370003
M01954_2.00
Physcomitrella patens
NNNNHDNNNN
NNNNHDNNNN
PBM
Weirauch et al.(2014)
pTH8469
0.542
0.542
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN
NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.542
0.542
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN
NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.542
0.542
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN
NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.542
0.542
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN
NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.542
0.542
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN
NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.542
0.542
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH
DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.542
0.542
DOF4.7
M06861_2.00
Arabidopsis thaliana
HHHHYHHHNHHHHHHHWWTWWCTTTTTN
NAAAAAGWWAWWDDDDDDDNDDDRDDDD
Dap-seq
OMalley et al.(2016)
At4g38000_col_a
0.542
0.542
DOF4.7
M06862_2.00
Arabidopsis thaliana
NYWACTTTWTB
VAWAAAGTWRN
Dap-seq
OMalley et al.(2016)
At4g38000_colamp_a
0.542
0.542
DOF5.8
M06868_2.00
Arabidopsis thaliana
HHNHHYHHHHYTTTHNCTTTTKNNHHNHW
WDNDDNNMAAAAGNDAAARDDDDRDDNDD
Dap-seq
OMalley et al.(2016)
AT5G66940_col_a
0.542
0.542
DOF5.8
M06869_2.00
Arabidopsis thaliana
NNHNDYWRCTTTTTNNHYHNH
DNDRDNNAAAAAGYWRHNDNN
Dap-seq
OMalley et al.(2016)
AT5G66940_colamp_a
0.542
0.542
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN
NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.542
0.542
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN
NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.542
0.542
DOF3.4
M06851_2.00
Arabidopsis thaliana
NNNHYHYHHHWYYHNCTTTWB
VWAAAGNDRRWDDDRDRDNNN
Dap-seq
OMalley et al.(2016)
OBP1_col_a
0.542
0.542
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN
NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.542
0.542
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH
DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.542
0.542
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN
NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.521
0.521
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN
NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.521
0.521
e_gw1.392.16.1
M01953_2.00
Physcomitrella patens
NNCTTTWNN
NNWAAAGNN
PBM
Weirauch et al.(2014)
pTH8686
0.521
0.521
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN
NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.521
0.521
gw1.385.26.1
M01956_2.00
Physcomitrella patens
NNNCKTTWNN
NNWAAMGNNN
PBM
Weirauch et al.(2014)
pTH8458
0.521
0.521
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN
NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.521
0.521
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.521
0.521
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN
NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.521
0.521
PK16340.1
M01220_2.00
Cannabis sativa
CKTTWNN
NNWAAMG
PBM
Lambert et al.(2019)
pTH10129
0.521
0.521
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN
NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.521
0.521
CDF5
M06837_2.00
Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH
DDNDWRRDRDAAARDDAAAAGHRMWDD
Dap-seq
OMalley et al.(2016)
AT1G69570_col_a
0.521
0.521
CDF5
M06838_2.00
Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN
NNVDVDDDWAARNNAAAAGBR
Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a
0.521
0.521
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN
NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.521
0.521
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH
DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.521
0.521
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN
NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.521
0.521
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN
NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.521
0.521
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN
NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.521
0.521
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN
NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.521
0.521
DOF4.2
M06856_2.00
Arabidopsis thaliana
NNHWWWRCCTTTTTNNHNH
DNDNNAAAAAGGYWWWDNN
Dap-seq
OMalley et al.(2016)
dof42_col_a
0.521
0.521
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT
AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.521
0.521
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW
WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.521
0.521
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH
DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.521
0.521
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN
NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.521
0.521
Dof3
M02676_2.00
Zea mays
BRCTTT
AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.521
0.521
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN
NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.521
0.521
For this family, TFs with SR scores >
0.508
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EFJ11189
Dof
12
59
EEPTICPRCSSVDTKFCYNNNKKASQPRYRCNSCKRKFTKGGRIRFVP
Links
Other
Dof
family TFs
Other
Selaginella moellendorffii
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy