cassava22953.valid.m1 (Manihot esculenta)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02701 (zf-Dof) IPR003851 cassava22953.valid.m1 T171456_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK20317.1
M01221_2.00 		Cannabis sativa
CKTTWNN
NNWAAMG		 PBM
Lambert et al.(2019)
pTH11298 		0.600 0.600
PK15337.1
M01219_2.00 		Cannabis sativa
NCTTTHN
NDAAAGN		 PBM
Lambert et al.(2019)
pTH10186 		0.556 0.556
DOF3.2
M01943_2.00 		Arabidopsis thaliana
NHDNNNNN
NNNNNHDN		 PBM
Weirauch et al.(2014)
pTH7183 		0.533 0.533
DOF5.6
M01063_2.00 		Arabidopsis thaliana
NYDDWNNNN
NNNNWHHRN		 PBM
Sullivan et al.(2014)
pTH7192 		0.533 0.533
DOF5.6
M01950_2.00 		Arabidopsis thaliana
NCKTTWNN
NNWAAMGN		 PBM
Weirauch et al.(2014)
pTH7655 		0.533 0.533
PK14080.1
M01218_2.00 		Cannabis sativa
NCDTTHNN
NNDAAHGN		 PBM
Lambert et al.(2019)
pTH10123 		0.533 0.533
DOF3.2
M06847_2.00 		Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN
NNDDADDNNAAAAAGBDRN		 Dap-seq
OMalley et al.(2016)
At3g45610_col_a 		0.533 0.533
DOF3.2
M06848_2.00 		Arabidopsis thaliana
NNHDDYHVCTTTTTB
VAAAAAGBDRHHDNN		 Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a 		0.533 0.533
DOF5.6
M06867_2.00 		Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH
DDDDDDDDNAAAAAGNDRADD		 Dap-seq
OMalley et al.(2016)
At5g62940_col_a 		0.533 0.533
DOF1.8
M01939_2.00 		Arabidopsis thaliana
NNNCKTTHNN
NNDAAMGNNN		 PBM
Weirauch et al.(2014)
pTH7256 		0.511 0.511
DOF1.8
M01062_2.00 		Arabidopsis thaliana
NHVCTTTWH
DWAAAGBDN		 PBM
Sullivan et al.(2014)
pTH7653 		0.511 0.511
DOF4.7
M01945_2.00 		Arabidopsis thaliana
NCKTTHNNN
NNNDAAMGN		 PBM
Weirauch et al.(2014)
pTH7189 		0.511 0.511
DOF5.3
M01947_2.00 		Arabidopsis thaliana
CKTTNNN
NNNAAMG		 PBM
Weirauch et al.(2014)
pTH7182 		0.511 0.511
DOF5.7
M00862_2.00 		Arabidopsis thaliana
NNNCKTTN
NAAMGNNN		 PBM
Franco-Zorrilla et al.(2014)
Dof5.7 		0.511 0.511
PK05671.1
M01215_2.00 		Cannabis sativa
NCDWWNNN
NNNWWHGN		 PBM
Lambert et al.(2019)
pTH10101 		0.511 0.511
PK20555.1
M01222_2.00 		Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN		 PBM
Lambert et al.(2019)
pTH10144 		0.511 0.511
PK23763.1
M01224_2.00 		Cannabis sativa
NNNCTTTWN
NWAAAGNNN		 PBM
Lambert et al.(2019)
pTH10194 		0.511 0.511
DOF1.8
M06835_2.00 		Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW
WDNDNNNAAAAAGKDRWWW		 Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b 		0.511 0.511
DOF1.8
M06836_2.00 		Arabidopsis thaliana
NHHMCTTTTTN
NAAAAAGKDDN		 Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a 		0.511 0.511
DOF4.7
M06861_2.00 		Arabidopsis thaliana
HHHHYHHHNHHHHHHHWWTWWCTTTTTN
NAAAAAGWWAWWDDDDDDDNDDDRDDDD		 Dap-seq
OMalley et al.(2016)
At4g38000_col_a 		0.511 0.511
DOF4.7
M06862_2.00 		Arabidopsis thaliana
NYWACTTTWTB
VAWAAAGTWRN		 Dap-seq
OMalley et al.(2016)
At4g38000_colamp_a 		0.511 0.511
DOF5.1
M06863_2.00 		Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN
NAAAAAGNWAARDDDRWRDRD		 Dap-seq
OMalley et al.(2016)
AT5G02460_col_a 		0.511 0.511
DOF5.1
M06864_2.00 		Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN
NDNNDNNAWAAAGYDRHDN		 Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a 		0.511 0.511
PBF
M02675_2.00 		Zea mays
RCTTT
AAAGY		 SELEX
Mathelier et al.(2014)
MA0064.1 		0.511 0.511
PBF
M10438_2.00 		Zea mays
BBDCTTTWNWD
HWNWAAAGHVV		 Transfac
Matys et al.(2006)
P$PBF_01 		0.511 0.511
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
cassava22953.valid.m1 Dof 52 81
cassava22953.valid.m1 Dof 79 93

Links

Other Dof family TFs
Other Manihot esculenta TFs

Invalid Input OrderBy

497 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action