CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.009G207800
(
Gossypium raimondii
)
Dof
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02701 (zf-Dof)
IPR003851
Gorai.009G207800
T171854_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN
NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.559
0.559
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN
NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.559
0.559
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN
NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.559
0.559
DOF3.1
M01942_2.00
Arabidopsis thaliana
NCKTTNNN
NNNAAMGN
PBM
Weirauch et al.(2014)
pTH8190
0.542
0.542
DOF3.4
M06851_2.00
Arabidopsis thaliana
NNNHYHYHHHWYYHNCTTTWB
VWAAAGNDRRWDDDRDRDNNN
Dap-seq
OMalley et al.(2016)
OBP1_col_a
0.542
0.542
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN
NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.525
0.525
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN
NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.525
0.525
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN
NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.525
0.525
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN
NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.525
0.525
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN
NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.525
0.525
DOF1.6
M06831_2.00
Arabidopsis thaliana
HYACTTTWNNN
NNNWAAAGTRD
Dap-seq
OMalley et al.(2016)
AT1G47655_col_a
0.525
0.525
DOF1.6
M06832_2.00
Arabidopsis thaliana
YYYTTDNCTTTWYBN
NVRWAAAGNHAARRR
Dap-seq
OMalley et al.(2016)
AT1G47655_colamp_a
0.525
0.525
PBF
M02675_2.00
Zea mays
RCTTT
AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.525
0.525
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD
HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.525
0.525
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN
NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.508
0.508
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH
DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.508
0.508
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN
NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.508
0.508
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN
NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.508
0.508
DOF5.8
M06868_2.00
Arabidopsis thaliana
HHNHHYHHHHYTTTHNCTTTTKNNHHNHW
WDNDDNNMAAAAGNDAAARDDDDRDDNDD
Dap-seq
OMalley et al.(2016)
AT5G66940_col_a
0.508
0.508
DOF5.8
M06869_2.00
Arabidopsis thaliana
NNHNDYWRCTTTTTNNHYHNH
DNDRDNNAAAAAGYWRHNDNN
Dap-seq
OMalley et al.(2016)
AT5G66940_colamp_a
0.508
0.508
For this family, TFs with SR scores >
0.508
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.009G207800.1
Dof
26
84
TEPLPCPRCDSTNTKFCYYNNYNLSQPRYFCKASKRSRCSSGSSPSVAVSSSSSVTHEA
Links
Other
Dof
family TFs
Other
Gossypium raimondii
TFs
767 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy