Lus10003208.g (Linum usitatissimum)
Dof

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02701 (zf-Dof) IPR003851 Lus10003208.g T171875_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK07031.1
M01216_2.00
Cannabis sativa
NCKTTHN

NDAAMGN
PBM
Lambert et al.(2019)
pTH11435
0.915 0.915
PK20555.1
M01222_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10144
0.881 0.881
DOF2.5
M01212_2.00
Arabidopsis thaliana
NNNCKTTWNN

NNWAAMGNNN
PBM
Lambert et al.(2019)
pTH11562
0.864 0.864
DOF2.5
M06843_2.00
Arabidopsis thaliana
DYHMCTTTTTN

NAAAAAGKDRH
Dap-seq
OMalley et al.(2016)
DAG2_col_a
0.864 0.864
DOF2.5
M06844_2.00
Arabidopsis thaliana
HWDYHMCTTTTTN

NAAAAAGKDRHWD
Dap-seq
OMalley et al.(2016)
DAG2_colamp_a
0.864 0.864
DOF1.8
M01939_2.00
Arabidopsis thaliana
NNNCKTTHNN

NNDAAMGNNN
PBM
Weirauch et al.(2014)
pTH7256
0.831 0.831
DOF1.8
M01062_2.00
Arabidopsis thaliana
NHVCTTTWH

DWAAAGBDN
PBM
Sullivan et al.(2014)
pTH7653
0.831 0.831
DOF5.3
M01947_2.00
Arabidopsis thaliana
CKTTNNN

NNNAAMG
PBM
Weirauch et al.(2014)
pTH7182
0.831 0.831
DOF1.8
M06835_2.00
Arabidopsis thaliana
WWWYHMCTTTTTNNNHNHW

WDNDNNNAAAAAGKDRWWW
Dap-seq
OMalley et al.(2016)
At1g64620_100ng20cy_b
0.831 0.831
DOF1.8
M06836_2.00
Arabidopsis thaliana
NHHMCTTTTTN

NAAAAAGKDDN
Dap-seq
OMalley et al.(2016)
At1g64620_colamp_a
0.831 0.831
DOF5.6
M01063_2.00
Arabidopsis thaliana
NYDDWNNNN

NNNNWHHRN
PBM
Sullivan et al.(2014)
pTH7192
0.814 0.814
DOF5.6
M01950_2.00
Arabidopsis thaliana
NCKTTWNN

NNWAAMGN
PBM
Weirauch et al.(2014)
pTH7655
0.814 0.814
DOF5.6
M06867_2.00
Arabidopsis thaliana
HHTYHNCTTTTTNHHHHHHHH

DDDDDDDDNAAAAAGNDRADD
Dap-seq
OMalley et al.(2016)
At5g62940_col_a
0.814 0.814
PK15337.1
M01219_2.00
Cannabis sativa
NCTTTHN

NDAAAGN
PBM
Lambert et al.(2019)
pTH10186
0.797 0.797
PK20317.1
M01221_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH11298
0.797 0.797
e_gw1.170.52.1
M01952_2.00
Physcomitrella patens
NNNCTTTHNN

NNDAAAGNNN
PBM
Weirauch et al.(2014)
pTH8464
0.780 0.780
gw1.12.257.1
M01955_2.00
Physcomitrella patens
NNDDNNN

NNNHHNN
PBM
Weirauch et al.(2014)
pTH8651
0.780 0.780
OBP3
M06854_2.00
Arabidopsis thaliana
BTHWCTTTTYNHYTTYWYYHH

DDRRWRAARDNRAAAAGWDAV
Dap-seq
OMalley et al.(2016)
OBP3_col_a
0.780 0.780
OBP3
M06855_2.00
Arabidopsis thaliana
NHNWHNHHNYWNCTTTTYN

NRAAAAGNWRNDDNDWNDN
Dap-seq
OMalley et al.(2016)
OBP3_colamp_a
0.780 0.780
PK05671.1
M01215_2.00
Cannabis sativa
NCDWWNNN

NNNWWHGN
PBM
Lambert et al.(2019)
pTH10101
0.763 0.763
AT3G52440
M06852_2.00
Arabidopsis thaliana
DYHMCTTTWTN

NAWAAAGKDRH
Dap-seq
OMalley et al.(2016)
AT3G52440_col_a
0.763 0.763
AT3G52440
M06853_2.00
Arabidopsis thaliana
WWDDYHMCTTTTTNNHHYYWW

WWRRDDNNAAAAAGKDRHHWW
Dap-seq
OMalley et al.(2016)
AT3G52440_colamp_a
0.763 0.763
DOF2.4
M01940_2.00
Arabidopsis thaliana
NCKTTWN

NWAAMGN
PBM
Weirauch et al.(2014)
pTH7912
0.746 0.746
DOF3.2
M01943_2.00
Arabidopsis thaliana
NHDNNNNN

NNNNNHDN
PBM
Weirauch et al.(2014)
pTH7183
0.746 0.746
PK10955.1
M01217_2.00
Cannabis sativa
VCTTTWNN

NNWAAAGB
PBM
Lambert et al.(2019)
pTH10264
0.746 0.746
PK23763.1
M01224_2.00
Cannabis sativa
NNNCTTTWN

NWAAAGNNN
PBM
Lambert et al.(2019)
pTH10194
0.746 0.746
DOF3.2
M06847_2.00
Arabidopsis thaliana
NYHVCTTTTTNNHHTHHNN

NNDDADDNNAAAAAGBDRN
Dap-seq
OMalley et al.(2016)
At3g45610_col_a
0.746 0.746
DOF3.2
M06848_2.00
Arabidopsis thaliana
NNHDDYHVCTTTTTB

VAAAAAGBDRHHDNN
Dap-seq
OMalley et al.(2016)
At3g45610_colamp_a
0.746 0.746
DOF2.4
M06841_2.00
Arabidopsis thaliana
HHWWTTHMCTTTTTN

NAAAAAGKDAAWWDD
Dap-seq
OMalley et al.(2016)
dof24_col_a
0.746 0.746
DOF2.4
M06842_2.00
Arabidopsis thaliana
HHMCTTTWTNNNNHN

NDNNNNAWAAAGKDD
Dap-seq
OMalley et al.(2016)
dof24_colamp_a
0.746 0.746
PBF
M02675_2.00
Zea mays
RCTTT

AAAGY
SELEX
Mathelier et al.(2014)
MA0064.1
0.746 0.746
PBF
M10438_2.00
Zea mays
BBDCTTTWNWD

HWNWAAAGHVV
Transfac
Matys et al.(2006)
P$PBF_01
0.746 0.746
DOF3.1
M01942_2.00
Arabidopsis thaliana
NCKTTNNN

NNNAAMGN
PBM
Weirauch et al.(2014)
pTH8190
0.729 0.729
DOF5.4
M01948_2.00
Arabidopsis thaliana
NDCGTTAWCN

NGWTAACGHN
PBM
Weirauch et al.(2014)
pTH7160
0.729 0.729
DOF5.4
M01949_2.00
Arabidopsis thaliana
NWACGTTWHNN

NNDWAACGTWN
PBM
Weirauch et al.(2014)
pTH7535
0.729 0.729
PK03929.1
M01214_2.00
Cannabis sativa
NNNCTTTWNN

NNWAAAGNNN
PBM
Lambert et al.(2019)
pTH10165
0.729 0.729
DOF5.1
M06863_2.00
Arabidopsis thaliana
HYHYWYHHHYTTWNCTTTTTN

NAAAAAGNWAARDDDRWRDRD
Dap-seq
OMalley et al.(2016)
AT5G02460_col_a
0.729 0.729
DOF5.1
M06864_2.00
Arabidopsis thaliana
NHDYHRCTTTWTNNHNNHN

NDNNDNNAWAAAGYDRHDN
Dap-seq
OMalley et al.(2016)
AT5G02460_colamp_a
0.729 0.729
DOF5.4
M06865_2.00
Arabidopsis thaliana
DNWNYHMCTTTTTN

NAAAAAGKDRNWNH
Dap-seq
OMalley et al.(2016)
OBP4_col_a
0.729 0.729
DOF5.4
M06866_2.00
Arabidopsis thaliana
HWDYHVCTTTTTNNNHHNH

DNDDNNNAAAAAGBDRHWD
Dap-seq
OMalley et al.(2016)
OBP4_colamp_a
0.729 0.729
Q6RK62_WHEAT
M10441_2.00
Triticum aestivum Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PBF_Q2_01
0.729 0.729
DOF5.7
M00862_2.00
Arabidopsis thaliana
NNNCKTTN

NAAMGNNN
PBM
Franco-Zorrilla et al.(2014)
Dof5.7
0.712 0.712
PK01144.1
M01213_2.00
Cannabis sativa
NCTTTWN

NWAAAGN
PBM
Lambert et al.(2019)
pTH10160
0.712 0.712
PK14080.1
M01218_2.00
Cannabis sativa
NCDTTHNN

NNDAAHGN
PBM
Lambert et al.(2019)
pTH10123
0.712 0.712
DOF1.7
M06833_2.00
Arabidopsis thaliana
HNNHWTYWNCTTTTYNHNHHN

NDDNDNRAAAAGNWRAWDNND
Dap-seq
OMalley et al.(2016)
Adof1_col_a
0.712 0.712
DOF1.7
M06834_2.00
Arabidopsis thaliana
NNHNNYWRCTTTTTNNHHNNH

DNNDDNNAAAAAGYWRNNDNN
Dap-seq
OMalley et al.(2016)
Adof1_colamp_a
0.712 0.712
DOF5.8
M06868_2.00
Arabidopsis thaliana
HHNHHYHHHHYTTTHNCTTTTKNNHHNHW

WDNDDNNMAAAAGNDAAARDDDDRDDNDD
Dap-seq
OMalley et al.(2016)
AT5G66940_col_a
0.712 0.712
DOF5.8
M06869_2.00
Arabidopsis thaliana
NNHNDYWRCTTTTTNNHYHNH

DNDRDNNAAAAAGYWRHNDNN
Dap-seq
OMalley et al.(2016)
AT5G66940_colamp_a
0.712 0.712
DOF1.6
M06831_2.00
Arabidopsis thaliana
HYACTTTWNNN

NNNWAAAGTRD
Dap-seq
OMalley et al.(2016)
AT1G47655_col_a
0.695 0.695
DOF1.6
M06832_2.00
Arabidopsis thaliana
YYYTTDNCTTTWYBN

NVRWAAAGNHAARRR
Dap-seq
OMalley et al.(2016)
AT1G47655_colamp_a
0.695 0.695
DOF2.2
M06839_2.00
Arabidopsis thaliana
HHHYHHHHYWTYHNCTTTTTN

NAAAAAGNDRAWRDDDDRDDD
Dap-seq
OMalley et al.(2016)
AT2G28810_col_a
0.695 0.695
DOF2.2
M06840_2.00
Arabidopsis thaliana
NYHNCTTTWTNNNHH

DDNNNAWAAAGNDRN
Dap-seq
OMalley et al.(2016)
AT2G28810_colamp_a
0.695 0.695
Dof3
M02676_2.00
Zea mays
BRCTTT

AAAGYV
SELEX
Mathelier et al.(2014)
MA0021.1
0.695 0.695
MNB1A
M02677_2.00
Zea mays
DCTTT

AAAGH
SELEX
Mathelier et al.(2014)
MA0053.1
0.695 0.695
MNB1A
M10440_2.00
Zea mays
NNDCTTTWNNN

NNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF1_01
0.695 0.695
Dof3
M10439_2.00
Zea mays
NBNCTTTNNBN

NVNNAAAGNVN
Transfac
Matys et al.(2006)
P$DOF3_01
0.695 0.695
CDF2
M01946_2.00
Arabidopsis thaliana
NHVCTTTWHN

NDWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7574
0.678 0.678
gw1.385.26.1
M01956_2.00
Physcomitrella patens
NNNCKTTWNN

NNWAAMGNNN
PBM
Weirauch et al.(2014)
pTH8458
0.678 0.678
DOF3.4
M06851_2.00
Arabidopsis thaliana
NNNHYHYHHHWYYHNCTTTWB

VWAAAGNDRRWDDDRDRDNNN
Dap-seq
OMalley et al.(2016)
OBP1_col_a
0.678 0.678
CDF3
M01944_2.00
Arabidopsis thaliana
NHVCTTTWN

NWAAAGBDN
PBM
Weirauch et al.(2014)
pTH7659
0.644 0.644
DOF4.7
M01945_2.00
Arabidopsis thaliana
NCKTTHNNN

NNNDAAMGN
PBM
Weirauch et al.(2014)
pTH7189
0.644 0.644
e_gw1.149.93.1
M01951_2.00
Physcomitrella patens
NCDTTNNN

NNNAAHGN
PBM
Weirauch et al.(2014)
pTH8463
0.644 0.644
e_gw1.392.16.1
M01953_2.00
Physcomitrella patens
NNCTTTWNN

NNWAAAGNN
PBM
Weirauch et al.(2014)
pTH8686
0.644 0.644
estExt_fgenesh1_pg.C_370003
M01954_2.00
Physcomitrella patens
NNNNHDNNNN

NNNNHDNNNN
PBM
Weirauch et al.(2014)
pTH8469
0.644 0.644
CDF5
M06837_2.00
Arabidopsis thaliana
HHWKYDCTTTTHHYTTTHYHYYWHNHH

DDNDWRRDRDAAARDDAAAAGHRMWDD
Dap-seq
OMalley et al.(2016)
AT1G69570_col_a
0.644 0.644
CDF5
M06838_2.00
Arabidopsis thaliana
YVCTTTTNNYTTWHHHBHBNN

NNVDVDDDWAARNNAAAAGBR
Dap-seq
OMalley et al.(2016)
AT1G69570_colamp_a
0.644 0.644
DOF4.7
M06861_2.00
Arabidopsis thaliana
HHHHYHHHNHHHHHHHWWTWWCTTTTTN

NAAAAAGWWAWWDDDDDDDNDDDRDDDD
Dap-seq
OMalley et al.(2016)
At4g38000_col_a
0.644 0.644
DOF4.7
M06862_2.00
Arabidopsis thaliana
NYWACTTTWTB

VAWAAAGTWRN
Dap-seq
OMalley et al.(2016)
At4g38000_colamp_a
0.644 0.644
CDF3
M06849_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNNHHHHW

WDDDDNNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
CDF3_col_a
0.644 0.644
CDF3
M06850_2.00
Arabidopsis thaliana
DDYRCTTTTHNNHYTTTN

NAAARDNNDAAAAGYRHH
Dap-seq
OMalley et al.(2016)
CDF3_colamp_a
0.644 0.644
DOF4.3
M06857_2.00
Arabidopsis thaliana
AAAGNYRCTTT

AAAGYRNCTTT
Dap-seq
OMalley et al.(2016)
dof43_col_a
0.644 0.644
DOF4.3
M06858_2.00
Arabidopsis thaliana
NWAAAGHRVCTTTW

WAAAGBYDCTTTWN
Dap-seq
OMalley et al.(2016)
dof43_colamp_a
0.644 0.644
DOF4.5
M06859_2.00
Arabidopsis thaliana
AAAKYHDCTTTWTN

NAWAAAGHDRMTTT
Dap-seq
OMalley et al.(2016)
dof45_col_a
0.644 0.644
DOF4.5
M06860_2.00
Arabidopsis thaliana
WAAAGYYDCTTTWDN

NHWAAAGHRRCTTTW
Dap-seq
OMalley et al.(2016)
dof45_colamp_a
0.644 0.644
Dof2
M02674_2.00
Zea mays
NGCTTT

AAAGCN
SELEX
Mathelier et al.(2014)
MA0020.1
0.644 0.644
Dof2
M10436_2.00
Zea mays
NNDCTTTWNND

HNNWAAAGHNN
Transfac
Matys et al.(2006)
P$DOF2_01
0.644 0.644
Dof2
M10437_2.00
Zea mays Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$DOF_Q2
0.644 0.644
DOF1.5
M01938_2.00
Arabidopsis thaliana
ACKTTWWH

DWWAAMGT
PBM
Weirauch et al.(2014)
pTH7676
0.627 0.627
PK16340.1
M01220_2.00
Cannabis sativa
CKTTWNN

NNWAAMG
PBM
Lambert et al.(2019)
pTH10129
0.627 0.627
DOF1.5
M06829_2.00
Arabidopsis thaliana
HWTDYMCTTTTTNHHHBHHNN

NNDDVDDDNAAAAAGKRHAWD
Dap-seq
OMalley et al.(2016)
COG1_col_a
0.627 0.627
DOF1.5
M06830_2.00
Arabidopsis thaliana
NHWWTDYACTTTTTN

NAAAAAGTRHAWWDN
Dap-seq
OMalley et al.(2016)
COG1_colamp_a
0.627 0.627
PK23009.1
M01223_2.00
Cannabis sativa
NNHVCTTTWN

NWAAAGBDNN
PBM
Lambert et al.(2019)
pTH10279
0.593 0.593
fgenesh1_pg.C_Chr_08.0001000114
M01957_2.00
Ostreococcus tauri
NCKWWNNN

NNNWWMGN
PBM
Weirauch et al.(2014)
pTH9431
0.559 0.559
DOF4.2
M06856_2.00
Arabidopsis thaliana
NNHWWWRCCTTTTTNNHNH

DNDNNAAAAAGGYWWWDNN
Dap-seq
OMalley et al.(2016)
dof42_col_a
0.508 0.508
For this family, TFs with SR scores > 0.508 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10003208 Dof 33 91

Links

Other Dof family TFs
Other Linum usitatissimum TFs

1951 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
30190.m010825 Ricinus communis 30190.m010825 I 0.000
Aquca_037_00132 Aquilegia coerulea Aquca_037_00132 I 0.000
ERF061 Arabidopsis thaliana AT1G64380 I 0.000
BGIOSGA017525 Oryza indica BGIOSGA017525 N 0.000
Bostr.29223s0053 Boechera stricta Bostr.29223s0053 I 0.000
BRADI2G15847 Brachypodium distachyon BRADI2G15847 N 0.000
BRADI5G16450 Brachypodium distachyon BRADI5G16450 I 0.000
Cagra.0062s0002 Capsella grandiflora Cagra.0062s0002 I 0.000
Carubv10020622m.g Capsella rubella Carubv10020622m.g I 0.000
chr2.CM0060.390.nc Lotus japonicus chr2.CM0060.390.nc I 0.000
Ciclev10021265m.g Citrus clementina Ciclev10021265m.g I 0.000
Cla011093 Citrullus lanatus Cla011093 I 0.000
Cla011559 Citrullus lanatus Cla011559 I 0.000
Cucsa.303840 Cucumis sativus Cucsa.303840 I 0.000
Eucgr.D01731 Eucalyptus grandis Eucgr.D01731 I 0.000
Eucgr.E00857 Eucalyptus grandis Eucgr.E00857 I 0.000
evm.TU.supercontig_79.43 Carica papaya evm.TU.supercontig_79.43 I 0.000
fgenesh2_kg.2__42__AT1G64380.1 Arabidopsis lyrata fgenesh2_kg.2__42__AT1G64380.1 I 0.000
gene32084-v1.0-hybrid Fragaria vesca gene32084-v1.0-hybrid I 0.000
GLYMA01G43450 Glycine max GLYMA01G43450 I 0.000
GLYMA11G02050 Glycine max GLYMA11G02050 I 0.000
Gorai.006G207800 Gossypium raimondii Gorai.006G207800 I 0.000
Gorai.007G026200 Gossypium raimondii Gorai.007G026200 N 0.000
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.000
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.000
GRMZM2G026926 Zea mays GRMZM2G026926 I 0.000
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.000
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.000
GSMUA_Achr1G00070_001 Musa acuminata GSMUA_Achr1G00070_001 I 0.000
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.000
LPERR05G22130 Leersia perrieri LPERR05G22130 N 0.000
Lus10001898.g Linum usitatissimum Lus10001898.g I 0.000
Lus10003889.g Linum usitatissimum Lus10003889.g I 0.000
MDP0000292965 Malus domestica MDP0000292965 I 0.000
MDP0000861708 Malus domestica MDP0000861708 I 0.000
mgf016403m Mimulus guttatus mgf016403m I 0.000
mgf021167m Mimulus guttatus mgf021167m I 0.000
MLOC_53577 Hordeum vulgare MLOC_53577 N 0.000
OGLUM05G28130 Oryza glumaepatula OGLUM05G28130 N 0.000
ONIVA05G28560 Oryza nivara ONIVA05G28560 N 0.000
OPUNC05G24070 Oryza punctata OPUNC05G24070 N 0.000
orange1.1g045091m.g Citrus sinensis orange1.1g045091m.g I 0.000
ORGLA03G0412600 Oryza glaberrima ORGLA03G0412600 N 0.000
ORUFI05G28440 Oryza rufipogon ORUFI05G28440 N 0.000
OS05G0572000 Oryza sativa OS05G0572000 N 0.000
Pavir.Ga00913 Panicum virgatum Pavir.Ga00913 I 0.000
Pavir.Gb00710 Panicum virgatum Pavir.Gb00710 I 0.000
Pavir.J01332 Panicum virgatum Pavir.J01332 N 0.000
Pavir.J10163 Panicum virgatum Pavir.J10163 N 0.000
Pm024053 Prunus mume Pm024053 I 0.000
POPTR_0001s10540 Populus trichocarpa POPTR_0001s10540 I 0.000
PRUPE_ppa009005mg Prunus persica PRUPE_ppa009005mg I 0.000
SapurV1A.0035s0570 Salix purpurea SapurV1A.0035s0570 I 0.000
SapurV1A.0237s0310 Salix purpurea SapurV1A.0237s0310 I 0.000
Sb06g023313 Sorghum bicolor Sb06g023313 I 0.000
Sb09g029070 Sorghum bicolor Sb09g029070 N 0.000
Si012169m.g Setaria italica Si012169m.g I 0.000
Thhalv10023588m.g Eutrema salsugineum Thhalv10023588m.g I 0.000
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.000